Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFE_1096Conjugal transfer protein TraU, putative; Identified by similarity to SP:P18471. (416 aa)    
Predicted Functional Partners:
AFE_1097
Conjugal transfer protein TraN, putative; Identified by similarity to SP:P24082.
 
   
 0.924
AFE_1095
Pilus assembly protein TraW, putative; Identified by similarity to SP:P18472.
 
   
 0.888
AFE_1067
Pilus assembly protein TraH, putative; Identified by similarity to SP:P15069.
 
   
 0.828
traC
type-IV secretion system protein TraC; Identified by similarity to SP:P18004; match to protein family HMM TIGR02746.
 
   
 0.803
AFE_1066
Pilus assembly protein TraF, putative.
 
     0.801
AFE_1081
Conjugal transfer protein, putative; Identified by similarity to GB:AAD54048.1.
 
     0.801
traE
Type IV conjugative transfer system protein TraE; Identified by similarity to GB:AAL27019.1; match to protein family HMM TIGR02761.
 
     0.793
AFE_1068
Pilus assembly protein TraG, putative; Identified by similarity to GB:AAK61533.1.
 
     0.781
AFE_1275
Conserved hypothetical protein.
  
     0.714
AFE_1286
Conserved hypothetical protein; Identified by similarity to GB:AAL59709.1; match to protein family HMM TIGR03033.
  
     0.708
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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