Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFE_1106Transposon, transposase; Adjacent to a gene for resolvase; identified by match to protein family HMM TIGR01766. (549 aa)    
Predicted Functional Partners:
AFE_1105
Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.
 
    0.924
AFE_3220
Hypothetical protein; Identified by glimmer; putative.
  
     0.758
AFE_1855
Membrane protein, putative; Identified by match to protein family HMM PF07690.
  
     0.745
AFE_1615
DNA primase TraC; Identified by similarity to SP:P27189; match to protein family HMM PF08401.
  
     0.744
AFE_1695
Conjugal transfer protein; Identified by similarity to SP:P54915; match to protein family HMM PF03524.
  
     0.738
AFE_3189
Conserved domain protein; Identified by similarity to GB:CAD18424.1.
  
     0.709
AFE_2298
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.708
AFE_1497
Conserved hypothetical protein; Identified by match to protein family HMM PF03573.
  
     0.691
AFE_2292
TonB-dependent receptor; Identified by match to protein family HMM PF00593.
  
     0.672
AFE_1726
Conjugal transfer protein TraF, putative; Identified by similarity to SP:Q44350.
  
     0.664
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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