Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFE_1127Identified by similarity to PIR:A83628; match to protein family HMM PF05014. (183 aa)    
Predicted Functional Partners:
AFE_1126
Hypothetical protein; Identified by glimmer; putative.
       0.773
AFE_1124
Hypothetical protein; Identified by glimmer; putative.
       0.709
AFE_1125
Hypothetical protein; Identified by glimmer; putative.
       0.709
AFE_1128
Hypothetical protein; Identified by glimmer; putative.
       0.671
AFE_1129
Lipoprotein, putative.
       0.611
AFE_1123
Hypothetical protein; Identified by glimmer; putative.
       0.528
AFE_1130
Hypothetical protein; Identified by glimmer; putative.
       0.515
AFE_2253
Conserved hypothetical protein; Identified by similarity to GB:BAB48985.1; match to protein family HMM PF00515; match to protein family HMM PF01835; match to protein family HMM PF07703.
 
     0.426
AFE_0552
ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF05992; match to protein family HMM PF06472.
  
     0.423
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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