Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFE_1130Hypothetical protein; Identified by glimmer; putative. (41 aa)    
Predicted Functional Partners:
AFE_0687
Hypothetical protein; Identified by glimmer; putative.
    
 
 0.818
AFE_0711
NHL repeat protein; Identified by match to protein family HMM PF01436.
    
 
 0.818
ftsQ
Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
   
 
 0.730
AFE_1129
Lipoprotein, putative.
       0.645
AFE_1128
Hypothetical protein; Identified by glimmer; putative.
       0.588
AFE_1126
Hypothetical protein; Identified by glimmer; putative.
       0.515
AFE_1127
Identified by similarity to PIR:A83628; match to protein family HMM PF05014.
       0.515
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
   
 
 0.479
AFE_1124
Hypothetical protein; Identified by glimmer; putative.
       0.477
AFE_1125
Hypothetical protein; Identified by glimmer; putative.
       0.477
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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