Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tnsA-1Identified by similarity to PIR:T45494; match to protein family HMM PF08721; match to protein family HMM PF08722. (276 aa)    
Predicted Functional Partners:
tnsC-1
Tn5468, transposition protein C; Identified by similarity to PIR:T45496.
 
 
 
 0.974
tnsB-1
Tn5468, transposase protein B; Identified by similarity to PIR:T45495.
  
 0.954
tnsD-1
Tn5468, transposition protein D; Identified by similarity to PIR:T45497.
 
   
 0.946
tnsC-2
Tn5468, transposition protein C; Identified by similarity to PIR:T45496.
 
 
 
 0.893
tnsB-2
Identified by similarity to PIR:T45495; match to protein family HMM PF00665.
  
 0.813
tnsD-2
Tn5468, transposition protein D; Identified by similarity to PIR:T45497.
 
   
 0.794
AFE_1205
Tn5468, orf5; Identified by similarity to PIR:T45498.
     
 0.727
AFE_2505
Transposon, transposition protein B, putative; Structure resembles Tn7; identified by similarity to SP:P13989; match to protein family HMM PF00665.
 
  
 0.630
AFE_1200
Hypothetical protein; Identified by glimmer; putative.
       0.512
AFE_1198
Hypothetical protein; Identified by glimmer; putative.
       0.479
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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