close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnsB-1Tn5468, transposase protein B; Identified by similarity to PIR:T45495. (722 aa)    
Predicted Functional Partners:
tnsC-1
Tn5468, transposition protein C; Identified by similarity to PIR:T45496.
 
 
 0.965
tnsA-1
Identified by similarity to PIR:T45494; match to protein family HMM PF08721; match to protein family HMM PF08722.
  
 0.954
tnsD-1
Tn5468, transposition protein D; Identified by similarity to PIR:T45497.
 
     0.942
tnsC-2
Tn5468, transposition protein C; Identified by similarity to PIR:T45496.
 
 
 0.854
tnsA-2
Identified by similarity to PIR:T45494; match to protein family HMM PF08721; match to protein family HMM PF08722.
  
 0.805
tnsD-2
Tn5468, transposition protein D; Identified by similarity to PIR:T45497.
 
     0.778
AFE_1205
Tn5468, orf5; Identified by similarity to PIR:T45498.
       0.698
AFE_1200
Hypothetical protein; Identified by glimmer; putative.
       0.512
AFE_1198
Hypothetical protein; Identified by glimmer; putative.
       0.479
rnhA-1
Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.479
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
Server load: very high (>100%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.