Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
tnsC-1Tn5468, transposition protein C; Identified by similarity to PIR:T45496. (552 aa)    
Predicted Functional Partners:
tnsA-1
Identified by similarity to PIR:T45494; match to protein family HMM PF08721; match to protein family HMM PF08722.
 
 
 
 0.974
tnsD-1
Tn5468, transposition protein D; Identified by similarity to PIR:T45497.
 
 
   0.971
tnsB-1
Tn5468, transposase protein B; Identified by similarity to PIR:T45495.
 
 
 0.963
tnsA-2
Identified by similarity to PIR:T45494; match to protein family HMM PF08721; match to protein family HMM PF08722.
 
 
 
 0.893
tnsD-2
Tn5468, transposition protein D; Identified by similarity to PIR:T45497.
 
 
   0.889
tnsB-2
Identified by similarity to PIR:T45495; match to protein family HMM PF00665.
 
 
 0.847
AFE_2505
Transposon, transposition protein B, putative; Structure resembles Tn7; identified by similarity to SP:P13989; match to protein family HMM PF00665.
 
 
 0.732
AFE_1205
Tn5468, orf5; Identified by similarity to PIR:T45498.
       0.705
AFE_1200
Hypothetical protein; Identified by glimmer; putative.
       0.512
AFE_1198
Hypothetical protein; Identified by glimmer; putative.
       0.479
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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