STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_1206Hypothetical protein; Identified by glimmer; putative. (1142 aa)    
Predicted Functional Partners:
AFE_0778
Conserved domain protein.
  
     0.575
AFE_1207
Hypothetical protein; Identified by glimmer; putative.
       0.566
AFE_0779
Cyanuric acid amidohydrolase; Cyclic amide hydrolase of unknown substrate specificity. Catalyzes the hydrolytic ring-opening of a cyclic amide. Does not act on cyanuric acid nor barbituric acid.
  
     0.549
AFE_2322
Conserved hypothetical protein; Identified by similarity to SP:Q11166; match to protein family HMM PF01073; match to protein family HMM PF01370.
  
   
 0.533
AFE_3010
Polyketide synthase, type I, putative; Identified by similarity to GB:AAK26474.1; match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801; match to protein family HMM PF08240; match to protein family HMM PF08659.
 
   
 0.516
AFE_2321
Monooxygenase, luciferase-like protein; Identified by match to protein family HMM PF00296.
  
   
 0.471
AFE_2097
Hypothetical protein; Identified by glimmer; putative.
 
   
 0.465
AFE_2011
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
  
 0.455
AFE_1209
Outer membrane autotransporter, putative; Identified by match to protein family HMM TIGR01414.
 
    0.449
AFE_2209
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
  
 0.440
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.