Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
AFE_1208Outer membrane autotransporter TapA; Identified by similarity to GB:CAC14218.1; match to protein family HMM TIGR01414. (991 aa)    
Predicted Functional Partners:
AFE_1432
Lipoprotein, putative.
  
     0.644
AFE_1209
Outer membrane autotransporter, putative; Identified by match to protein family HMM TIGR01414.
 
  
0.625
AFE_1212
Conserved hypothetical protein; Identified by similarity to GB:CAD16952.1.
 
     0.578
AFE_1207
Hypothetical protein; Identified by glimmer; putative.
       0.564
AFE_1210
Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171.
 
     0.550
AFE_1211
TPR domain/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07721.
   
   0.513
AFE_0409
Conserved domain protein; Identified by similarity to GB:AAN79743.1; match to protein family HMM PF08238.
 
     0.460
AFE_1206
Hypothetical protein; Identified by glimmer; putative.
       0.425
AFE_2344
Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.
  
     0.425
AFE_0471
Conserved hypothetical protein; Identified by similarity to GB:CAD86279.1; match to protein family HMM PF04430.
  
     0.410
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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