AFE_1210 protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_1208	AFE_1209	AFE_1208	AFE_1209	Outer membrane autotransporter TapA; Identified by similarity to GB:CAC14218.1; match to protein family HMM TIGR01414.	Outer membrane autotransporter, putative; Identified by match to protein family HMM TIGR01414.	0.625
AFE_1208	AFE_1210	AFE_1208	AFE_1210	Outer membrane autotransporter TapA; Identified by similarity to GB:CAC14218.1; match to protein family HMM TIGR01414.	Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171.	0.550
AFE_1208	AFE_1211	AFE_1208	AFE_1211	Outer membrane autotransporter TapA; Identified by similarity to GB:CAC14218.1; match to protein family HMM TIGR01414.	TPR domain/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07721.	0.513
AFE_1208	AFE_1212	AFE_1208	AFE_1212	Outer membrane autotransporter TapA; Identified by similarity to GB:CAC14218.1; match to protein family HMM TIGR01414.	Conserved hypothetical protein; Identified by similarity to GB:CAD16952.1.	0.578
AFE_1209	AFE_1208	AFE_1209	AFE_1208	Outer membrane autotransporter, putative; Identified by match to protein family HMM TIGR01414.	Outer membrane autotransporter TapA; Identified by similarity to GB:CAC14218.1; match to protein family HMM TIGR01414.	0.625
AFE_1209	AFE_1210	AFE_1209	AFE_1210	Outer membrane autotransporter, putative; Identified by match to protein family HMM TIGR01414.	Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171.	0.811
AFE_1209	AFE_1211	AFE_1209	AFE_1211	Outer membrane autotransporter, putative; Identified by match to protein family HMM TIGR01414.	TPR domain/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07721.	0.773
AFE_1209	AFE_1212	AFE_1209	AFE_1212	Outer membrane autotransporter, putative; Identified by match to protein family HMM TIGR01414.	Conserved hypothetical protein; Identified by similarity to GB:CAD16952.1.	0.813
AFE_1210	AFE_1208	AFE_1210	AFE_1208	Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171.	Outer membrane autotransporter TapA; Identified by similarity to GB:CAC14218.1; match to protein family HMM TIGR01414.	0.550
AFE_1210	AFE_1209	AFE_1210	AFE_1209	Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171.	Outer membrane autotransporter, putative; Identified by match to protein family HMM TIGR01414.	0.811
AFE_1210	AFE_1211	AFE_1210	AFE_1211	Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171.	TPR domain/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07721.	0.818
AFE_1210	AFE_1212	AFE_1210	AFE_1212	Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171.	Conserved hypothetical protein; Identified by similarity to GB:CAD16952.1.	0.773
AFE_1210	AFE_2684	AFE_1210	AFE_2684	Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171.	Identified by match to protein family HMM PF05658; match to protein family HMM PF05662; match to protein family HMM TIGR03304.	0.444
AFE_1210	AFE_3138	AFE_1210	AFE_3138	Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171.	Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171.	0.909
AFE_1210	proC	AFE_1210	AFE_0262	Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171.	Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.	0.900
AFE_1210	rpsL	AFE_1210	AFE_0322	Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.654
AFE_1211	AFE_1208	AFE_1211	AFE_1208	TPR domain/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07721.	Outer membrane autotransporter TapA; Identified by similarity to GB:CAC14218.1; match to protein family HMM TIGR01414.	0.513
AFE_1211	AFE_1209	AFE_1211	AFE_1209	TPR domain/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07721.	Outer membrane autotransporter, putative; Identified by match to protein family HMM TIGR01414.	0.773
AFE_1211	AFE_1210	AFE_1211	AFE_1210	TPR domain/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07721.	Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171.	0.818
AFE_1211	AFE_1212	AFE_1211	AFE_1212	TPR domain/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07721.	Conserved hypothetical protein; Identified by similarity to GB:CAD16952.1.	0.868