AFE_1215 protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
AFE_1023	AFE_1033	HNH endonuclease domain protein; Identified by match to protein family HMM PF01844.	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	0.644
AFE_1023	AFE_1105	HNH endonuclease domain protein; Identified by match to protein family HMM PF01844.	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	0.577
AFE_1023	AFE_1215	HNH endonuclease domain protein; Identified by match to protein family HMM PF01844.	ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.	0.542
AFE_1023	AFE_1304	HNH endonuclease domain protein; Identified by match to protein family HMM PF01844.	Transposon, resolvase; A gene for transposase is adjacent; identified by match to protein family HMM PF00239; match to protein family HMM PF00376.	0.704
AFE_1033	AFE_1023	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	HNH endonuclease domain protein; Identified by match to protein family HMM PF01844.	0.644
AFE_1033	AFE_1215	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.	0.747
AFE_1033	AFE_1365	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	HNH endonuclease domain protein; Identified by match to protein family HMM PF01844.	0.630
AFE_1105	AFE_1023	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	HNH endonuclease domain protein; Identified by match to protein family HMM PF01844.	0.577
AFE_1105	AFE_1215	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.	0.744
AFE_1105	AFE_1365	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	HNH endonuclease domain protein; Identified by match to protein family HMM PF01844.	0.559
AFE_1214	AFE_1215	Hypothetical protein; Identified by glimmer; putative.	ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.	0.526
AFE_1215	AFE_1023	ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.	HNH endonuclease domain protein; Identified by match to protein family HMM PF01844.	0.542
AFE_1215	AFE_1033	ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	0.747
AFE_1215	AFE_1105	ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	0.744
AFE_1215	AFE_1214	ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.	Hypothetical protein; Identified by glimmer; putative.	0.526
AFE_1215	AFE_1216	ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.	Hypothetical protein; Identified by glimmer; putative.	0.550
AFE_1215	AFE_1217	ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.	uracil-DNA glycosylase, family 4; Identified by match to protein family HMM PF03167.	0.485
AFE_1215	AFE_1218	ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.	Conserved domain protein; Identified by similarity to PIR:A97990.	0.485
AFE_1215	AFE_1304	ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.	Transposon, resolvase; A gene for transposase is adjacent; identified by match to protein family HMM PF00239; match to protein family HMM PF00376.	0.735
AFE_1215	AFE_1365	ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.	HNH endonuclease domain protein; Identified by match to protein family HMM PF01844.	0.523