STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_1288Hypothetical protein; Identified by glimmer; putative. (151 aa)    
Predicted Functional Partners:
AFE_1287
Hypothetical protein; Identified by glimmer; putative.
       0.773
AFE_1289
Hypothetical protein; Identified by glimmer; putative.
       0.671
AFE_1290
Hypothetical protein; Identified by glimmer; putative.
       0.671
AFE_1291
Hypothetical protein; Identified by glimmer; putative.
      
0.625
AFE_1286
Conserved hypothetical protein; Identified by similarity to GB:AAL59709.1; match to protein family HMM TIGR03033.
       0.494
AFE_1285
Conserved domain protein; Identified by similarity to GB:AAL55518.2.
       0.442
AFE_1292
Conserved hypothetical protein; Identified by similarity to GB:AAL59705.1.
       0.403
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.