AFE_1305 protein (Acidithiobacillus ferrooxidans)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AFE_1305

Transposon, transposase; A gene for resolvase is adjacent. (464 aa)

Predicted Functional Partners:

AFE_1304

0.940

AFE_1033

0.694

AFE_1105

0.682

AFE_3174

0.658

AFE_1303

0.567

AFE_2443

0.512

AFE_1307

0.498

AFE_1034

0.496

AFE_2415

0.443

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

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... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
AFE_1033	AFE_1034	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	Transposon, transposase; Adjacent to a gene for resolvase; identified by match to protein family HMM PF07282.	0.934
AFE_1033	AFE_1305	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	Transposon, transposase; A gene for resolvase is adjacent.	0.694
AFE_1034	AFE_1033	Transposon, transposase; Adjacent to a gene for resolvase; identified by match to protein family HMM PF07282.	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	0.934
AFE_1034	AFE_1105	Transposon, transposase; Adjacent to a gene for resolvase; identified by match to protein family HMM PF07282.	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	0.727
AFE_1034	AFE_1304	Transposon, transposase; Adjacent to a gene for resolvase; identified by match to protein family HMM PF07282.	Transposon, resolvase; A gene for transposase is adjacent; identified by match to protein family HMM PF00239; match to protein family HMM PF00376.	0.692
AFE_1034	AFE_1305	Transposon, transposase; Adjacent to a gene for resolvase; identified by match to protein family HMM PF07282.	Transposon, transposase; A gene for resolvase is adjacent.	0.496
AFE_1034	AFE_2443	Transposon, transposase; Adjacent to a gene for resolvase; identified by match to protein family HMM PF07282.	Transposase, degenerate.	0.410
AFE_1105	AFE_1034	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	Transposon, transposase; Adjacent to a gene for resolvase; identified by match to protein family HMM PF07282.	0.727
AFE_1105	AFE_1305	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	Transposon, transposase; A gene for resolvase is adjacent.	0.682
AFE_1303	AFE_1304	Conserved domain protein; Identified by similarity to SP:O59347.	Transposon, resolvase; A gene for transposase is adjacent; identified by match to protein family HMM PF00239; match to protein family HMM PF00376.	0.567
AFE_1303	AFE_1305	Conserved domain protein; Identified by similarity to SP:O59347.	Transposon, transposase; A gene for resolvase is adjacent.	0.567
AFE_1304	AFE_1034	Transposon, resolvase; A gene for transposase is adjacent; identified by match to protein family HMM PF00239; match to protein family HMM PF00376.	Transposon, transposase; Adjacent to a gene for resolvase; identified by match to protein family HMM PF07282.	0.692
AFE_1304	AFE_1303	Transposon, resolvase; A gene for transposase is adjacent; identified by match to protein family HMM PF00239; match to protein family HMM PF00376.	Conserved domain protein; Identified by similarity to SP:O59347.	0.567
AFE_1304	AFE_1305	Transposon, resolvase; A gene for transposase is adjacent; identified by match to protein family HMM PF00239; match to protein family HMM PF00376.	Transposon, transposase; A gene for resolvase is adjacent.	0.940
AFE_1304	AFE_1307	Transposon, resolvase; A gene for transposase is adjacent; identified by match to protein family HMM PF00239; match to protein family HMM PF00376.	Hypothetical protein; Identified by glimmer; putative.	0.498
AFE_1305	AFE_1033	Transposon, transposase; A gene for resolvase is adjacent.	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	0.694
AFE_1305	AFE_1034	Transposon, transposase; A gene for resolvase is adjacent.	Transposon, transposase; Adjacent to a gene for resolvase; identified by match to protein family HMM PF07282.	0.496
AFE_1305	AFE_1105	Transposon, transposase; A gene for resolvase is adjacent.	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	0.682
AFE_1305	AFE_1303	Transposon, transposase; A gene for resolvase is adjacent.	Conserved domain protein; Identified by similarity to SP:O59347.	0.567
AFE_1305	AFE_1304	Transposon, transposase; A gene for resolvase is adjacent.	Transposon, resolvase; A gene for transposase is adjacent; identified by match to protein family HMM PF00239; match to protein family HMM PF00376.	0.940