AFE_1330 protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AFE_1330

ISAfe2, transposase; Required for the transposition of the insertion element. (420 aa)

Predicted Functional Partners:

AFE_3176

0.639

AFE_2413

0.634

AFE_1373

0.598

AFE_3177

0.539

AFE_1328

0.523

AFE_1329

0.516

AFE_1610

0.472

AFE_1597

0.411

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
AFE_1328	AFE_1329	Transposase, IS605 OrfB family protein, putative; Identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766.	Hypothetical protein; Identified by glimmer; putative.	0.773
AFE_1328	AFE_1330	Transposase, IS605 OrfB family protein, putative; Identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766.	ISAfe2, transposase; Required for the transposition of the insertion element.	0.523
AFE_1329	AFE_1328	Hypothetical protein; Identified by glimmer; putative.	Transposase, IS605 OrfB family protein, putative; Identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766.	0.773
AFE_1329	AFE_1330	Hypothetical protein; Identified by glimmer; putative.	ISAfe2, transposase; Required for the transposition of the insertion element.	0.516
AFE_1330	AFE_1328	ISAfe2, transposase; Required for the transposition of the insertion element.	Transposase, IS605 OrfB family protein, putative; Identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766.	0.523
AFE_1330	AFE_1329	ISAfe2, transposase; Required for the transposition of the insertion element.	Hypothetical protein; Identified by glimmer; putative.	0.516
AFE_1330	AFE_1373	ISAfe2, transposase; Required for the transposition of the insertion element.	Transposition helper protein; Identified by similarity to SP:P55923; match to protein family HMM PF01695; match to protein family HMM PF08483.	0.598
AFE_1330	AFE_1597	ISAfe2, transposase; Required for the transposition of the insertion element.	Transposase, degenerate.	0.411
AFE_1330	AFE_1610	ISAfe2, transposase; Required for the transposition of the insertion element.	ISAfe7, transposase orfA; Identified by match to protein family HMM PF01527.	0.472
AFE_1330	AFE_2413	ISAfe2, transposase; Required for the transposition of the insertion element.	Transposase, degenerate; Identified by match to protein family HMM PF01695.	0.634
AFE_1330	AFE_3176	ISAfe2, transposase; Required for the transposition of the insertion element.	ISAfe9, transposition helper protein; Identified by match to protein family HMM PF01695.	0.639
AFE_1330	AFE_3177	ISAfe2, transposase; Required for the transposition of the insertion element.	ISAfe9, transposase; Identified by match to protein family HMM PF00665.	0.539
AFE_1373	AFE_1330	Transposition helper protein; Identified by similarity to SP:P55923; match to protein family HMM PF01695; match to protein family HMM PF08483.	ISAfe2, transposase; Required for the transposition of the insertion element.	0.598
AFE_1373	AFE_1597	Transposition helper protein; Identified by similarity to SP:P55923; match to protein family HMM PF01695; match to protein family HMM PF08483.	Transposase, degenerate.	0.529
AFE_1373	AFE_3177	Transposition helper protein; Identified by similarity to SP:P55923; match to protein family HMM PF01695; match to protein family HMM PF08483.	ISAfe9, transposase; Identified by match to protein family HMM PF00665.	0.733
AFE_1597	AFE_1330	Transposase, degenerate.	ISAfe2, transposase; Required for the transposition of the insertion element.	0.411
AFE_1597	AFE_1373	Transposase, degenerate.	Transposition helper protein; Identified by similarity to SP:P55923; match to protein family HMM PF01695; match to protein family HMM PF08483.	0.529
AFE_1597	AFE_2413	Transposase, degenerate.	Transposase, degenerate; Identified by match to protein family HMM PF01695.	0.570
AFE_1597	AFE_3176	Transposase, degenerate.	ISAfe9, transposition helper protein; Identified by match to protein family HMM PF01695.	0.572
AFE_1597	AFE_3177	Transposase, degenerate.	ISAfe9, transposase; Identified by match to protein family HMM PF00665.	0.497