Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFE_1355Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534. (413 aa)    
Predicted Functional Partners:
AFE_1357
Glycosyl transferase, group 1; Identified by match to protein family HMM PF00534.
     0.960
AFE_1354
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
    
0.840
AFE_1351
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
    
0.839
AFE_1349
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
    
0.837
AFE_1350
Membrane protein, putative.
  
    0.788
asnB
Asparagine synthase (glutamine-hydrolyzing); Identified by similarity to SP:P54420; match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536.
       0.774
AFE_1348
Hypothetical protein; Identified by glimmer; putative.
       0.773
AFE_1352
Lipoprotein, putative.
       0.773
AFE_1347
Hypothetical protein; Identified by glimmer; putative.
 
     0.614
AFE_1344
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943.
 
    0.568
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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