AFE_1365 protein (Acidithiobacillus ferrooxidans)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

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Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AFE_1365

HNH endonuclease domain protein; Identified by match to protein family HMM PF01844. (471 aa)

Predicted Functional Partners:

AFE_1304

0.698

AFE_1033

0.630

AFE_1366

0.596

AFE_1105

0.559

AFE_1215

0.523

AFE_1058

0.520

AFE_1034

0.433

vapC-4

0.430

AFE_1363

0.400

AFE_1364

0.400

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_1033	AFE_1034	AFE_1033	AFE_1034	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	Transposon, transposase; Adjacent to a gene for resolvase; identified by match to protein family HMM PF07282.	0.934
AFE_1033	AFE_1058	AFE_1033	AFE_1058	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.	0.746
AFE_1033	AFE_1215	AFE_1033	AFE_1215	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.	0.747
AFE_1033	AFE_1365	AFE_1033	AFE_1365	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	HNH endonuclease domain protein; Identified by match to protein family HMM PF01844.	0.630
AFE_1034	AFE_1033	AFE_1034	AFE_1033	Transposon, transposase; Adjacent to a gene for resolvase; identified by match to protein family HMM PF07282.	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	0.934
AFE_1034	AFE_1105	AFE_1034	AFE_1105	Transposon, transposase; Adjacent to a gene for resolvase; identified by match to protein family HMM PF07282.	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	0.727
AFE_1034	AFE_1304	AFE_1034	AFE_1304	Transposon, transposase; Adjacent to a gene for resolvase; identified by match to protein family HMM PF07282.	Transposon, resolvase; A gene for transposase is adjacent; identified by match to protein family HMM PF00239; match to protein family HMM PF00376.	0.692
AFE_1034	AFE_1365	AFE_1034	AFE_1365	Transposon, transposase; Adjacent to a gene for resolvase; identified by match to protein family HMM PF07282.	HNH endonuclease domain protein; Identified by match to protein family HMM PF01844.	0.433
AFE_1058	AFE_1033	AFE_1058	AFE_1033	ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	0.746
AFE_1058	AFE_1105	AFE_1058	AFE_1105	ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	0.743
AFE_1058	AFE_1304	AFE_1058	AFE_1304	ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.	Transposon, resolvase; A gene for transposase is adjacent; identified by match to protein family HMM PF00239; match to protein family HMM PF00376.	0.734
AFE_1058	AFE_1365	AFE_1058	AFE_1365	ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.	HNH endonuclease domain protein; Identified by match to protein family HMM PF01844.	0.520
AFE_1105	AFE_1034	AFE_1105	AFE_1034	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	Transposon, transposase; Adjacent to a gene for resolvase; identified by match to protein family HMM PF07282.	0.727
AFE_1105	AFE_1058	AFE_1105	AFE_1058	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.	0.743
AFE_1105	AFE_1215	AFE_1105	AFE_1215	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.	0.744
AFE_1105	AFE_1365	AFE_1105	AFE_1365	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	HNH endonuclease domain protein; Identified by match to protein family HMM PF01844.	0.559
AFE_1215	AFE_1033	AFE_1215	AFE_1033	ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	0.747
AFE_1215	AFE_1105	AFE_1215	AFE_1105	ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.	Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.	0.744
AFE_1215	AFE_1304	AFE_1215	AFE_1304	ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.	Transposon, resolvase; A gene for transposase is adjacent; identified by match to protein family HMM PF00239; match to protein family HMM PF00376.	0.735
AFE_1215	AFE_1365	AFE_1215	AFE_1365	ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.	HNH endonuclease domain protein; Identified by match to protein family HMM PF01844.	0.523