STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_1469Identified by match to protein family HMM PF02562. (469 aa)    
Predicted Functional Partners:
AFE_1468
Antioxidant, AhpC/Tsa family; Identified by match to protein family HMM PF00578; match to protein family HMM PF08534.
       0.809
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
       0.590
AFE_1467
Transcriptional regulator, Fur family; Belongs to the Fur family.
       0.539
AFE_2910
Conserved hypothetical protein; Identified by match to protein family HMM PF06798; match to protein family HMM PF08298.
   
  
 0.444
AFE_2912
Conserved hypothetical protein; Identified by similarity to SP:Q8Z6E7; match to protein family HMM PF04285; Belongs to the UPF0229 family.
   
    0.407
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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