Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AFE_1503Nitroreductase, putative. (538 aa)    
Predicted Functional Partners:
AFE_1502
Ankyrin repeat protein/rhodanese-like domain protein; Identified by match to protein family HMM PF00023; match to protein family HMM PF00581.
 
   0.899
AFE_1499
ATPase, AAA family; Identified by match to protein family HMM PF00004.
 
     0.736
AFE_1476
Conserved hypothetical protein; Identified by similarity to GB:AAA64729.1.
  
     0.733
AFE_1501
Conserved domain protein; Identified by similarity to GB:AAN66836.1; match to protein family HMM TIGR02605.
 
     0.725
AFE_1533
Conserved hypothetical protein; Identified by similarity to SP:P23177.
  
     0.690
AFE_1510
Conserved hypothetical protein; Identified by similarity to GB:AAB66329.1.
 
     0.671
nifW
nifW protein, putative; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
 
     0.657
AFE_1474
Glutathione S-transferase, putative; Identified by similarity to SP:P39100; match to protein family HMM PF02798.
  
     0.655
AFE_1534
Leucine rich repeat protein; Identified by match to protein family HMM PF01816.
  
     0.655
AFE_1536
NifZ domain protein.
  
     0.636
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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