Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFE_1528Hypothetical protein; Identified by glimmer; putative. (33 aa)    
Predicted Functional Partners:
nifB
Nitrogenase cofactor biosynthesis protein NifB; Identified by match to protein family HMM PF02579; match to protein family HMM PF04055; match to protein family HMM TIGR01290.
       0.701
AFE_1530
Ferredoxin; Identified by similarity to SP:P00207; match to protein family HMM PF00037.
       0.559
AFE_1531
Iron-sulfur cluster assembly accessory protein; Identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; Belongs to the HesB/IscA family.
       0.551
AFE_1526
Hypothetical protein; Identified by glimmer; putative.
       0.533
AFE_1532
Hypothetical protein; Identified by glimmer; putative.
       0.464
AFE_1533
Conserved hypothetical protein; Identified by similarity to SP:P23177.
       0.464
AFE_1534
Leucine rich repeat protein; Identified by match to protein family HMM PF01816.
       0.464
AFE_1535
NifZ domain protein; Identified by match to protein family HMM PF04319.
       0.464
AFE_1536
NifZ domain protein.
       0.464
iscS-1
Cysteine desulfurase; Identified by similarity to SP:O54055; match to protein family HMM PF00266.
       0.464
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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