STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_1538Nitrogen fixation protein, putative; Identified by similarity to SP:P09427; match to protein family HMM PF06988; match to protein family HMM TIGR02934. (69 aa)    
Predicted Functional Partners:
AFE_1535
NifZ domain protein; Identified by match to protein family HMM PF04319.
 
  
 0.955
AFE_1543
Conserved hypothetical protein; Identified by similarity to GB:AAF61911.1.
 
    0.947
AFE_1534
Leucine rich repeat protein; Identified by match to protein family HMM PF01816.
 
    0.941
AFE_1533
Conserved hypothetical protein; Identified by similarity to SP:P23177.
 
     0.923
AFE_1536
NifZ domain protein.
 
     0.908
nifB
Nitrogenase cofactor biosynthesis protein NifB; Identified by match to protein family HMM PF02579; match to protein family HMM PF04055; match to protein family HMM TIGR01290.
 
  
 0.899
AFE_1539
Conserved hypothetical protein; Identified by similarity to GB:AAA64714.1.
 
     0.863
nifW
nifW protein, putative; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
 
  
 0.843
nifX
Nitrogen fixation protein NifX; Identified by similarity to SP:P19078; match to protein family HMM PF02579; match to protein family HMM TIGR02663.
 
  
 0.838
AFE_1514
Conserved hypothetical protein; Identified by similarity to GB:BAC47013.1; match to protein family HMM PF03270; match to protein family HMM TIGR02935.
 
    0.834
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.