AFE_1554 protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AFE_1554

Membrane protein, putative; Identified by match to protein family HMM PF02656. (217 aa)

Predicted Functional Partners:

AFE_2385

0.703

AFE_2040

0.635

AFE_2292

0.631

AFE_2274

0.500

AFE_2089

0.499

ogt-2

0.475

AFE_1615

0.464

AFE_2298

0.460

AFE_3220

0.460

AFE_2508

0.450

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_1554	AFE_1615	AFE_1554	AFE_1615	Membrane protein, putative; Identified by match to protein family HMM PF02656.	DNA primase TraC; Identified by similarity to SP:P27189; match to protein family HMM PF08401.	0.464
AFE_1554	AFE_2040	AFE_1554	AFE_2040	Membrane protein, putative; Identified by match to protein family HMM PF02656.	TonB-dependent receptor; Identified by match to protein family HMM PF00593.	0.635
AFE_1554	AFE_2089	AFE_1554	AFE_2089	Membrane protein, putative; Identified by match to protein family HMM PF02656.	Hypothetical protein; Identified by glimmer; putative.	0.499
AFE_1554	AFE_2274	AFE_1554	AFE_2274	Membrane protein, putative; Identified by match to protein family HMM PF02656.	Conserved hypothetical protein; Identified by similarity to PIR:AG1979; match to protein family HMM PF01436; match to protein family HMM PF08450.	0.500
AFE_1554	AFE_2292	AFE_1554	AFE_2292	Membrane protein, putative; Identified by match to protein family HMM PF02656.	TonB-dependent receptor; Identified by match to protein family HMM PF00593.	0.631
AFE_1554	AFE_2298	AFE_1554	AFE_2298	Membrane protein, putative; Identified by match to protein family HMM PF02656.	TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.	0.460
AFE_1554	AFE_2385	AFE_1554	AFE_2385	Membrane protein, putative; Identified by match to protein family HMM PF02656.	SCP-2 sterol transfer family protein; Identified by match to protein family HMM PF02036.	0.703
AFE_1554	AFE_2508	AFE_1554	AFE_2508	Membrane protein, putative; Identified by match to protein family HMM PF02656.	Conserved hypothetical protein; Identified by similarity to PIR:C70336.	0.450
AFE_1554	AFE_3220	AFE_1554	AFE_3220	Membrane protein, putative; Identified by match to protein family HMM PF02656.	Hypothetical protein; Identified by glimmer; putative.	0.460
AFE_1554	ogt-2	AFE_1554	AFE_1553	Membrane protein, putative; Identified by match to protein family HMM PF02656.	methylated-DNA--protein-cysteine methyltransferase; Identified by similarity to SP:P09168; match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589.	0.475
AFE_1615	AFE_1554	AFE_1615	AFE_1554	DNA primase TraC; Identified by similarity to SP:P27189; match to protein family HMM PF08401.	Membrane protein, putative; Identified by match to protein family HMM PF02656.	0.464
AFE_1615	AFE_2040	AFE_1615	AFE_2040	DNA primase TraC; Identified by similarity to SP:P27189; match to protein family HMM PF08401.	TonB-dependent receptor; Identified by match to protein family HMM PF00593.	0.718
AFE_1615	AFE_2274	AFE_1615	AFE_2274	DNA primase TraC; Identified by similarity to SP:P27189; match to protein family HMM PF08401.	Conserved hypothetical protein; Identified by similarity to PIR:AG1979; match to protein family HMM PF01436; match to protein family HMM PF08450.	0.666
AFE_1615	AFE_2292	AFE_1615	AFE_2292	DNA primase TraC; Identified by similarity to SP:P27189; match to protein family HMM PF08401.	TonB-dependent receptor; Identified by match to protein family HMM PF00593.	0.765
AFE_1615	AFE_2298	AFE_1615	AFE_2298	DNA primase TraC; Identified by similarity to SP:P27189; match to protein family HMM PF08401.	TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.	0.768
AFE_1615	AFE_3220	AFE_1615	AFE_3220	DNA primase TraC; Identified by similarity to SP:P27189; match to protein family HMM PF08401.	Hypothetical protein; Identified by glimmer; putative.	0.773
AFE_2040	AFE_1554	AFE_2040	AFE_1554	TonB-dependent receptor; Identified by match to protein family HMM PF00593.	Membrane protein, putative; Identified by match to protein family HMM PF02656.	0.635
AFE_2040	AFE_1615	AFE_2040	AFE_1615	TonB-dependent receptor; Identified by match to protein family HMM PF00593.	DNA primase TraC; Identified by similarity to SP:P27189; match to protein family HMM PF08401.	0.718
AFE_2040	AFE_2274	AFE_2040	AFE_2274	TonB-dependent receptor; Identified by match to protein family HMM PF00593.	Conserved hypothetical protein; Identified by similarity to PIR:AG1979; match to protein family HMM PF01436; match to protein family HMM PF08450.	0.780
AFE_2040	AFE_2298	AFE_2040	AFE_2298	TonB-dependent receptor; Identified by match to protein family HMM PF00593.	TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.	0.762