STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_1566DNA replication protein DnaC, putative; Identified by similarity to SP:P07905; match to protein family HMM PF01695. (286 aa)    
Predicted Functional Partners:
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
 
 0.918
AFE_1568
Methyltransferase, putative; Identified by match to protein family HMM PF02086.
 
    0.817
AFE_1567
Hypothetical protein; Identified by glimmer; putative.
       0.773
AFE_1565
Hypothetical protein; Identified by glimmer; putative.
  
    0.767
AFE_2413
Transposase, degenerate; Identified by match to protein family HMM PF01695.
  
     0.644
AFE_3177
ISAfe9, transposase; Identified by match to protein family HMM PF00665.
 
     0.600
AFE_1564
Prophage Afe02, transcriptional regulator, Cro family.
       0.598
ssb-2
Single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621.
     
 0.593
AFE_1373
Transposition helper protein; Identified by similarity to SP:P55923; match to protein family HMM PF01695; match to protein family HMM PF08483.
  
     0.583
AFE_2298
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.491
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.