AFE_1578 protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
AFE_0477	AFE_1578	Virulence protein, putative; Identified by similarity to SP:Q05459; match to protein family HMM PF04014.	PIN domain protein; Identified by match to protein family HMM PF01850.	0.515
AFE_0477	AFE_2130	Virulence protein, putative; Identified by similarity to SP:Q05459; match to protein family HMM PF04014.	Virulence-associated protein, putative; Identified by similarity to SP:Q05459.	0.425
AFE_1575	AFE_1576	Type I restriction-modification system, R subunit; Identified by similarity to SP:P08956; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM PF08463.	Type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	0.962
AFE_1575	AFE_1577	Type I restriction-modification system, R subunit; Identified by similarity to SP:P08956; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM PF08463.	Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384.	0.989
AFE_1575	AFE_1578	Type I restriction-modification system, R subunit; Identified by similarity to SP:P08956; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM PF08463.	PIN domain protein; Identified by match to protein family HMM PF01850.	0.585
AFE_1575	AFE_1579	Type I restriction-modification system, R subunit; Identified by similarity to SP:P08956; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM PF08463.	Conserved hypothetical protein; Identified by similarity to GB:AAK52344.1.	0.582
AFE_1576	AFE_1575	Type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	Type I restriction-modification system, R subunit; Identified by similarity to SP:P08956; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM PF08463.	0.962
AFE_1576	AFE_1577	Type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384.	0.975
AFE_1576	AFE_1578	Type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	PIN domain protein; Identified by match to protein family HMM PF01850.	0.529
AFE_1576	AFE_1579	Type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	Conserved hypothetical protein; Identified by similarity to GB:AAK52344.1.	0.529
AFE_1577	AFE_1575	Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384.	Type I restriction-modification system, R subunit; Identified by similarity to SP:P08956; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM PF08463.	0.989
AFE_1577	AFE_1576	Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384.	Type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	0.975
AFE_1577	AFE_1578	Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384.	PIN domain protein; Identified by match to protein family HMM PF01850.	0.541
AFE_1577	AFE_1579	Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384.	Conserved hypothetical protein; Identified by similarity to GB:AAK52344.1.	0.529
AFE_1578	AFE_0477	PIN domain protein; Identified by match to protein family HMM PF01850.	Virulence protein, putative; Identified by similarity to SP:Q05459; match to protein family HMM PF04014.	0.515
AFE_1578	AFE_1575	PIN domain protein; Identified by match to protein family HMM PF01850.	Type I restriction-modification system, R subunit; Identified by similarity to SP:P08956; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM PF08463.	0.585
AFE_1578	AFE_1576	PIN domain protein; Identified by match to protein family HMM PF01850.	Type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	0.529
AFE_1578	AFE_1577	PIN domain protein; Identified by match to protein family HMM PF01850.	Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384.	0.541
AFE_1578	AFE_1579	PIN domain protein; Identified by match to protein family HMM PF01850.	Conserved hypothetical protein; Identified by similarity to GB:AAK52344.1.	0.969
AFE_1578	AFE_1581	PIN domain protein; Identified by match to protein family HMM PF01850.	Hypothetical protein; Identified by glimmer; putative.	0.527