AFE_1579 protein (Acidithiobacillus ferrooxidans)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AFE_1579

Conserved hypothetical protein; Identified by similarity to GB:AAK52344.1. (65 aa)

Predicted Functional Partners:

AFE_1578

0.969

AFE_1575

0.582

AFE_2889

0.539

AFE_1576

0.529

AFE_1577

0.529

AFE_1581

0.527

AFE_2888

0.454

vapC-2

0.401

vapC-3

0.401

vapC-5

0.401

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_1575	AFE_1576	AFE_1575	AFE_1576	Type I restriction-modification system, R subunit; Identified by similarity to SP:P08956; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM PF08463.	Type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	0.962
AFE_1575	AFE_1577	AFE_1575	AFE_1577	Type I restriction-modification system, R subunit; Identified by similarity to SP:P08956; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM PF08463.	Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384.	0.989
AFE_1575	AFE_1578	AFE_1575	AFE_1578	Type I restriction-modification system, R subunit; Identified by similarity to SP:P08956; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM PF08463.	PIN domain protein; Identified by match to protein family HMM PF01850.	0.585
AFE_1575	AFE_1579	AFE_1575	AFE_1579	Type I restriction-modification system, R subunit; Identified by similarity to SP:P08956; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM PF08463.	Conserved hypothetical protein; Identified by similarity to GB:AAK52344.1.	0.582
AFE_1576	AFE_1575	AFE_1576	AFE_1575	Type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	Type I restriction-modification system, R subunit; Identified by similarity to SP:P08956; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM PF08463.	0.962
AFE_1576	AFE_1577	AFE_1576	AFE_1577	Type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384.	0.975
AFE_1576	AFE_1578	AFE_1576	AFE_1578	Type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	PIN domain protein; Identified by match to protein family HMM PF01850.	0.529
AFE_1576	AFE_1579	AFE_1576	AFE_1579	Type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	Conserved hypothetical protein; Identified by similarity to GB:AAK52344.1.	0.529
AFE_1577	AFE_1575	AFE_1577	AFE_1575	Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384.	Type I restriction-modification system, R subunit; Identified by similarity to SP:P08956; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM PF08463.	0.989
AFE_1577	AFE_1576	AFE_1577	AFE_1576	Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384.	Type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	0.975
AFE_1577	AFE_1578	AFE_1577	AFE_1578	Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384.	PIN domain protein; Identified by match to protein family HMM PF01850.	0.541
AFE_1577	AFE_1579	AFE_1577	AFE_1579	Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384.	Conserved hypothetical protein; Identified by similarity to GB:AAK52344.1.	0.529
AFE_1578	AFE_1575	AFE_1578	AFE_1575	PIN domain protein; Identified by match to protein family HMM PF01850.	Type I restriction-modification system, R subunit; Identified by similarity to SP:P08956; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM PF08463.	0.585
AFE_1578	AFE_1576	AFE_1578	AFE_1576	PIN domain protein; Identified by match to protein family HMM PF01850.	Type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	0.529
AFE_1578	AFE_1577	AFE_1578	AFE_1577	PIN domain protein; Identified by match to protein family HMM PF01850.	Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384.	0.541
AFE_1578	AFE_1579	AFE_1578	AFE_1579	PIN domain protein; Identified by match to protein family HMM PF01850.	Conserved hypothetical protein; Identified by similarity to GB:AAK52344.1.	0.969
AFE_1578	AFE_1581	AFE_1578	AFE_1581	PIN domain protein; Identified by match to protein family HMM PF01850.	Hypothetical protein; Identified by glimmer; putative.	0.527
AFE_1578	AFE_2888	AFE_1578	AFE_2888	PIN domain protein; Identified by match to protein family HMM PF01850.	PIN domain protein; Identified by match to protein family HMM PF01850.	0.407
AFE_1578	AFE_2889	AFE_1578	AFE_2889	PIN domain protein; Identified by match to protein family HMM PF01850.	Transcriptional regulator, AbrB family; Identified by match to protein family HMM PF04014.	0.470
AFE_1579	AFE_1575	AFE_1579	AFE_1575	Conserved hypothetical protein; Identified by similarity to GB:AAK52344.1.	Type I restriction-modification system, R subunit; Identified by similarity to SP:P08956; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM PF08463.	0.582