STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_1597Transposase, degenerate. (80 aa)    
Predicted Functional Partners:
AFE_1596
Hypothetical protein; Identified by glimmer; putative.
       0.773
AFE_1598
Hypothetical protein; Identified by glimmer; putative.
       0.536
AFE_3176
ISAfe9, transposition helper protein; Identified by match to protein family HMM PF01695.
 
  
 0.525
AFE_2413
Transposase, degenerate; Identified by match to protein family HMM PF01695.
 
  
 0.523
AFE_1373
Transposition helper protein; Identified by similarity to SP:P55923; match to protein family HMM PF01695; match to protein family HMM PF08483.
 
  
 0.477
AFE_3177
ISAfe9, transposase; Identified by match to protein family HMM PF00665.
 
  
 0.444
AFE_1595
Hypothetical protein; Identified by glimmer; putative.
       0.421
AFE_1330
ISAfe2, transposase; Required for the transposition of the insertion element.
 
     0.406
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.