Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
AFE_1235 | AFE_1615 | Lipoprotein, putative. | DNA primase TraC; Identified by similarity to SP:P27189; match to protein family HMM PF08401. | 0.450 |
AFE_1235 | AFE_1621 | Lipoprotein, putative. | Conserved hypothetical protein; Identified by similarity to GB:CAD61135.1. | 0.787 |
AFE_1235 | AFE_1642 | Lipoprotein, putative. | Conjugal transfer protein trbL, putative; Identified by similarity to GB:AAN33564.1; match to protein family HMM TIGR02783. | 0.401 |
AFE_1235 | AFE_1694 | Lipoprotein, putative. | Conjugal transfer protein; Identified by similarity to SP:P54914. | 0.804 |
AFE_1235 | AFE_1695 | Lipoprotein, putative. | Conjugal transfer protein; Identified by similarity to SP:P54915; match to protein family HMM PF03524. | 0.755 |
AFE_1235 | AFE_1699 | Lipoprotein, putative. | Identified by match to protein family HMM PF02534. | 0.792 |
AFE_1235 | AFE_1726 | Lipoprotein, putative. | Conjugal transfer protein TraF, putative; Identified by similarity to SP:Q44350. | 0.716 |
AFE_1615 | AFE_1235 | DNA primase TraC; Identified by similarity to SP:P27189; match to protein family HMM PF08401. | Lipoprotein, putative. | 0.450 |
AFE_1615 | AFE_1620 | DNA primase TraC; Identified by similarity to SP:P27189; match to protein family HMM PF08401. | Hypothetical protein; Identified by glimmer; putative. | 0.414 |
AFE_1615 | AFE_1621 | DNA primase TraC; Identified by similarity to SP:P27189; match to protein family HMM PF08401. | Conserved hypothetical protein; Identified by similarity to GB:CAD61135.1. | 0.869 |
AFE_1615 | AFE_1638 | DNA primase TraC; Identified by similarity to SP:P27189; match to protein family HMM PF08401. | Conjugal transfer protein trbE, putative; Identified by similarity to SP:P05353; match to protein family HMM PF03135. | 0.709 |
AFE_1615 | AFE_1642 | DNA primase TraC; Identified by similarity to SP:P27189; match to protein family HMM PF08401. | Conjugal transfer protein trbL, putative; Identified by similarity to GB:AAN33564.1; match to protein family HMM TIGR02783. | 0.794 |
AFE_1615 | AFE_1694 | DNA primase TraC; Identified by similarity to SP:P27189; match to protein family HMM PF08401. | Conjugal transfer protein; Identified by similarity to SP:P54914. | 0.791 |
AFE_1615 | AFE_1695 | DNA primase TraC; Identified by similarity to SP:P27189; match to protein family HMM PF08401. | Conjugal transfer protein; Identified by similarity to SP:P54915; match to protein family HMM PF03524. | 0.785 |
AFE_1615 | AFE_1698 | DNA primase TraC; Identified by similarity to SP:P27189; match to protein family HMM PF08401. | Conjugal transfer -like protein; Identified by match to protein family HMM PF01464. | 0.763 |
AFE_1615 | AFE_1699 | DNA primase TraC; Identified by similarity to SP:P27189; match to protein family HMM PF08401. | Identified by match to protein family HMM PF02534. | 0.783 |
AFE_1615 | AFE_1726 | DNA primase TraC; Identified by similarity to SP:P27189; match to protein family HMM PF08401. | Conjugal transfer protein TraF, putative; Identified by similarity to SP:Q44350. | 0.800 |
AFE_1620 | AFE_1615 | Hypothetical protein; Identified by glimmer; putative. | DNA primase TraC; Identified by similarity to SP:P27189; match to protein family HMM PF08401. | 0.414 |
AFE_1620 | AFE_1621 | Hypothetical protein; Identified by glimmer; putative. | Conserved hypothetical protein; Identified by similarity to GB:CAD61135.1. | 0.773 |
AFE_1621 | AFE_1235 | Conserved hypothetical protein; Identified by similarity to GB:CAD61135.1. | Lipoprotein, putative. | 0.787 |
page 1 of 5