Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
AFE_1679Conserved hypothetical protein; Identified by similarity to GB:CAB45259.1. (84 aa)    
Predicted Functional Partners:
AFE_1680
Conserved hypothetical protein; Identified by similarity to GB:AAB36936.1; match to protein family HMM PF01656.
       0.777
p30
P30 protein; Identified by similarity to GB:BAA76361.1; match to protein family HMM PF07728; match to protein family HMM PF08406.
       0.678
AFE_1681
Conserved hypothetical protein; Identified by similarity to GB:CAE21373.1.
       0.659
bfr
Bacterioferritin; Identified by match to protein family HMM PF00210.
       0.659
AFE_1677
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
       0.652
cscE
Carboxysome shell peptide; Identified by similarity to GB:AAD30516.1; match to protein family HMM PF00936.
       0.640
cscD
Carboxysome shell peptide; Identified by similarity to GB:AAD30515.1; match to protein family HMM PF00936.
       0.527
cscC
Carboxysome shell peptide; Identified by similarity to GB:AAD30514.1; match to protein family HMM PF00936.
       0.452
AFE_1676
Fructose-bisphosphate aldolase class II family protein; Identified by match to protein family HMM PF01116.
       0.429
cscB
Carboxysome peptide B; Identified by similarity to GB:AAD30513.1; match to protein family HMM PF03319; match to protein family HMM TIGR02704.
       0.403
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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