Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFE_1680Conserved hypothetical protein; Identified by similarity to GB:AAB36936.1; match to protein family HMM PF01656. (211 aa)    
Predicted Functional Partners:
AFE_3211
Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family.
 
 
 0.888
AFE_1719
Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family.
 
 
 0.835
AFE_1681
Conserved hypothetical protein; Identified by similarity to GB:CAE21373.1.
 
     0.799
AFE_1679
Conserved hypothetical protein; Identified by similarity to GB:CAB45259.1.
       0.777
bfr
Bacterioferritin; Identified by match to protein family HMM PF00210.
 
     0.767
AFE_1677
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
 
     0.744
AFE_1720
Identified by match to protein family HMM PF01656.
  
     0.727
cab2
Carboxysome shell carbonic anhydrase; Identified by similarity to GB:AAD30511.1; match to protein family HMM PF08936; match to protein family HMM TIGR02701.
 
     0.682
p30
P30 protein; Identified by similarity to GB:BAA76361.1; match to protein family HMM PF07728; match to protein family HMM PF08406.
       0.680
cscB
Carboxysome peptide B; Identified by similarity to GB:AAD30513.1; match to protein family HMM PF03319; match to protein family HMM TIGR02704.
 
     0.671
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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