Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bfrBacterioferritin; Identified by match to protein family HMM PF00210. (147 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
  
 0.926
AFE_0786
Heme-utilization protein HutZ, putative; Identified by similarity to GB:AAG23392.1; match to protein family HMM PF01243.
     
  0.900
AFE_1681
Conserved hypothetical protein; Identified by similarity to GB:CAE21373.1.
 
     0.890
cab2
Carboxysome shell carbonic anhydrase; Identified by similarity to GB:AAD30511.1; match to protein family HMM PF08936; match to protein family HMM TIGR02701.
 
   
 0.815
cscB
Carboxysome peptide B; Identified by similarity to GB:AAD30513.1; match to protein family HMM PF03319; match to protein family HMM TIGR02704.
 
     0.794
cscE
Carboxysome shell peptide; Identified by similarity to GB:AAD30516.1; match to protein family HMM PF00936.
 
     0.793
AFE_1689
Tat (twin-arginine translocation) pathway signal sequence domain protein.
 
     0.786
cscA
Carboxysome peptide A; Identified by similarity to GB:AAD30512.1; match to protein family HMM PF03319; match to protein family HMM TIGR02703.
 
     0.784
AFE_1680
Conserved hypothetical protein; Identified by similarity to GB:AAB36936.1; match to protein family HMM PF01656.
 
     0.767
cscD
Carboxysome shell peptide; Identified by similarity to GB:AAD30515.1; match to protein family HMM PF00936.
 
     0.676
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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