Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
cscACarboxysome peptide A; Identified by similarity to GB:AAD30512.1; match to protein family HMM PF03319; match to protein family HMM TIGR02703. (82 aa)    
Predicted Functional Partners:
AFE_1689
Tat (twin-arginine translocation) pathway signal sequence domain protein.
 
 
   0.980
cab2
Carboxysome shell carbonic anhydrase; Identified by similarity to GB:AAD30511.1; match to protein family HMM PF08936; match to protein family HMM TIGR02701.
 
     0.954
cscC
Carboxysome shell peptide; Identified by similarity to GB:AAD30514.1; match to protein family HMM PF00936.
 
 
 
 0.941
cscE
Carboxysome shell peptide; Identified by similarity to GB:AAD30516.1; match to protein family HMM PF00936.
 
 
 
 0.933
cscD
Carboxysome shell peptide; Identified by similarity to GB:AAD30515.1; match to protein family HMM PF00936.
 
 
 
 0.924
AFE_1681
Conserved hypothetical protein; Identified by similarity to GB:CAE21373.1.
 
     0.887
cscB
Carboxysome peptide B; Identified by similarity to GB:AAD30513.1; match to protein family HMM PF03319; match to protein family HMM TIGR02704.
 
    
0.816
bfr
Bacterioferritin; Identified by match to protein family HMM PF00210.
 
     0.784
cbbS-2
Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.
 
 
 
 0.722
AFE_1680
Conserved hypothetical protein; Identified by similarity to GB:AAB36936.1; match to protein family HMM PF01656.
 
     0.651
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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