Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFE_1706ISAfe4, transposase orf3; Identified by match to protein family HMM PF03050. (545 aa)    
Predicted Functional Partners:
AFE_1708
ISAfe4, transposase orf2; Identified by match to protein family HMM PF05717.
 
     0.911
AFE_2469
ISAfe4, transposase orf2; Identified by match to protein family HMM PF05717.
 
     0.776
AFE_2938
ISAfe4, transposase orf2; Identified by match to protein family HMM PF05717.
 
     0.776
AFE_1709
ISAfe4, tranposase orf1; Assignment based on BLAST search at the ISFinder database, and proximity to other transposase ORFs.
       0.623
AFE_1710
Hypothetical protein; Identified by glimmer; putative.
       0.442
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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