AFE_1716 protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
AFE_0967	AFE_1547	Type IV pilin biogenesis protein, putative; Identified by similarity to GB:AAQ58159.1.	Membrane protein, putative; Identified by match to protein family HMM PF07690.	0.773
AFE_0967	AFE_1716	Type IV pilin biogenesis protein, putative; Identified by similarity to GB:AAQ58159.1.	GTP-binding protein.	0.623
AFE_0967	AFE_2018	Type IV pilin biogenesis protein, putative; Identified by similarity to GB:AAQ58159.1.	Conserved hypothetical protein; Identified by similarity to PIR:C70988.	0.468
AFE_0967	AFE_2019	Type IV pilin biogenesis protein, putative; Identified by similarity to GB:AAQ58159.1.	Conserved domain protein.	0.747
AFE_0967	AFE_2040	Type IV pilin biogenesis protein, putative; Identified by similarity to GB:AAQ58159.1.	TonB-dependent receptor; Identified by match to protein family HMM PF00593.	0.771
AFE_0967	AFE_2292	Type IV pilin biogenesis protein, putative; Identified by similarity to GB:AAQ58159.1.	TonB-dependent receptor; Identified by match to protein family HMM PF00593.	0.773
AFE_0967	AFE_2307	Type IV pilin biogenesis protein, putative; Identified by similarity to GB:AAQ58159.1.	Conserved domain protein; Identified by similarity to GB:AAO90256.1.	0.632
AFE_0967	AFE_2935	Type IV pilin biogenesis protein, putative; Identified by similarity to GB:AAQ58159.1.	TonB-dependent receptor; Identified by match to protein family HMM PF00593.	0.765
AFE_0967	AFE_3090	Type IV pilin biogenesis protein, putative; Identified by similarity to GB:AAQ58159.1.	Membrane protein, putative; Identified by match to protein family HMM PF07690.	0.523
AFE_1498	AFE_1547	ABC transporter, periplasmic substrate-binding protein, putative; Identified by match to protein family HMM PF01547.	Membrane protein, putative; Identified by match to protein family HMM PF07690.	0.608
AFE_1498	AFE_1716	ABC transporter, periplasmic substrate-binding protein, putative; Identified by match to protein family HMM PF01547.	GTP-binding protein.	0.627
AFE_1498	AFE_2018	ABC transporter, periplasmic substrate-binding protein, putative; Identified by match to protein family HMM PF01547.	Conserved hypothetical protein; Identified by similarity to PIR:C70988.	0.708
AFE_1498	AFE_2019	ABC transporter, periplasmic substrate-binding protein, putative; Identified by match to protein family HMM PF01547.	Conserved domain protein.	0.745
AFE_1498	AFE_2040	ABC transporter, periplasmic substrate-binding protein, putative; Identified by match to protein family HMM PF01547.	TonB-dependent receptor; Identified by match to protein family HMM PF00593.	0.422
AFE_1498	AFE_2307	ABC transporter, periplasmic substrate-binding protein, putative; Identified by match to protein family HMM PF01547.	Conserved domain protein; Identified by similarity to GB:AAO90256.1.	0.489
AFE_1498	AFE_3090	ABC transporter, periplasmic substrate-binding protein, putative; Identified by match to protein family HMM PF01547.	Membrane protein, putative; Identified by match to protein family HMM PF07690.	0.651
AFE_1547	AFE_0967	Membrane protein, putative; Identified by match to protein family HMM PF07690.	Type IV pilin biogenesis protein, putative; Identified by similarity to GB:AAQ58159.1.	0.773
AFE_1547	AFE_1498	Membrane protein, putative; Identified by match to protein family HMM PF07690.	ABC transporter, periplasmic substrate-binding protein, putative; Identified by match to protein family HMM PF01547.	0.608
AFE_1547	AFE_1716	Membrane protein, putative; Identified by match to protein family HMM PF07690.	GTP-binding protein.	0.704
AFE_1547	AFE_2018	Membrane protein, putative; Identified by match to protein family HMM PF07690.	Conserved hypothetical protein; Identified by similarity to PIR:C70988.	0.654