AFE_1720 protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_0266	AFE_1680	AFE_0266	AFE_1680	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535; match to protein family HMM TIGR03469.	Conserved hypothetical protein; Identified by similarity to GB:AAB36936.1; match to protein family HMM PF01656.	0.483
AFE_0266	AFE_1720	AFE_0266	AFE_1720	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535; match to protein family HMM TIGR03469.	Identified by match to protein family HMM PF01656.	0.483
AFE_0266	AFE_2121	AFE_0266	AFE_2121	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535; match to protein family HMM TIGR03469.	Identified by match to protein family HMM PF00535; match to protein family HMM TIGR03472.	0.726
AFE_1680	AFE_0266	AFE_1680	AFE_0266	Conserved hypothetical protein; Identified by similarity to GB:AAB36936.1; match to protein family HMM PF01656.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535; match to protein family HMM TIGR03469.	0.483
AFE_1680	AFE_1719	AFE_1680	AFE_1719	Conserved hypothetical protein; Identified by similarity to GB:AAB36936.1; match to protein family HMM PF01656.	Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family.	0.835
AFE_1680	AFE_1720	AFE_1680	AFE_1720	Conserved hypothetical protein; Identified by similarity to GB:AAB36936.1; match to protein family HMM PF01656.	Identified by match to protein family HMM PF01656.	0.727
AFE_1680	AFE_2121	AFE_1680	AFE_2121	Conserved hypothetical protein; Identified by similarity to GB:AAB36936.1; match to protein family HMM PF01656.	Identified by match to protein family HMM PF00535; match to protein family HMM TIGR03472.	0.483
AFE_1680	AFE_3211	AFE_1680	AFE_3211	Conserved hypothetical protein; Identified by similarity to GB:AAB36936.1; match to protein family HMM PF01656.	Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family.	0.888
AFE_1680	dnaA	AFE_1680	AFE_3309	Conserved hypothetical protein; Identified by similarity to GB:AAB36936.1; match to protein family HMM PF01656.	Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.	0.418
AFE_1717	AFE_1719	AFE_1717	AFE_1719	Hypothetical protein; Identified by glimmer; putative.	Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family.	0.551
AFE_1717	AFE_1720	AFE_1717	AFE_1720	Hypothetical protein; Identified by glimmer; putative.	Identified by match to protein family HMM PF01656.	0.551
AFE_1717	AFE_1721	AFE_1717	AFE_1721	Hypothetical protein; Identified by glimmer; putative.	Hypothetical protein; Identified by glimmer; putative.	0.551
AFE_1719	AFE_1680	AFE_1719	AFE_1680	Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family.	Conserved hypothetical protein; Identified by similarity to GB:AAB36936.1; match to protein family HMM PF01656.	0.835
AFE_1719	AFE_1717	AFE_1719	AFE_1717	Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family.	Hypothetical protein; Identified by glimmer; putative.	0.551
AFE_1719	AFE_1720	AFE_1719	AFE_1720	Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family.	Identified by match to protein family HMM PF01656.	0.977
AFE_1719	AFE_1721	AFE_1719	AFE_1721	Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family.	Hypothetical protein; Identified by glimmer; putative.	0.777
AFE_1719	AFE_1722	AFE_1719	AFE_1722	Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family.	Hypothetical protein; Identified by glimmer; putative.	0.533
AFE_1720	AFE_0266	AFE_1720	AFE_0266	Identified by match to protein family HMM PF01656.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535; match to protein family HMM TIGR03469.	0.483
AFE_1720	AFE_1680	AFE_1720	AFE_1680	Identified by match to protein family HMM PF01656.	Conserved hypothetical protein; Identified by similarity to GB:AAB36936.1; match to protein family HMM PF01656.	0.727
AFE_1720	AFE_1717	AFE_1720	AFE_1717	Identified by match to protein family HMM PF01656.	Hypothetical protein; Identified by glimmer; putative.	0.551