dapD protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_1817	AFE_1821	AFE_1817	AFE_1821	Sulfotransferase domain protein; Identified by match to protein family HMM PF00685.	Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155; match to protein family HMM TIGR03538.	0.761
AFE_1817	AFE_1824	AFE_1817	AFE_1824	Sulfotransferase domain protein; Identified by match to protein family HMM PF00685.	Membrane protein, putative.	0.576
AFE_1817	dapD	AFE_1817	AFE_1820	Sulfotransferase domain protein; Identified by match to protein family HMM PF00685.	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Identified by similarity to SP:P03948; match to protein family HMM TIGR00965; Belongs to the transferase hexapeptide repeat family.	0.785
AFE_1817	dapE	AFE_1817	AFE_1819	Sulfotransferase domain protein; Identified by match to protein family HMM PF00685.	Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.	0.803
AFE_1817	rlpA	AFE_1817	AFE_1818	Sulfotransferase domain protein; Identified by match to protein family HMM PF00685.	Rare lipoprotein A, putative; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.	0.803
AFE_1821	AFE_1817	AFE_1821	AFE_1817	Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155; match to protein family HMM TIGR03538.	Sulfotransferase domain protein; Identified by match to protein family HMM PF00685.	0.761
AFE_1821	AFE_1824	AFE_1821	AFE_1824	Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155; match to protein family HMM TIGR03538.	Membrane protein, putative.	0.651
AFE_1821	argD	AFE_1821	AFE_0406	Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155; match to protein family HMM TIGR03538.	Acetylornithine aminotransferase; Identified by similarity to SP:P54752; match to protein family HMM PF00202; match to protein family HMM TIGR00707; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.	0.910
AFE_1821	dapD	AFE_1821	AFE_1820	Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155; match to protein family HMM TIGR03538.	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Identified by similarity to SP:P03948; match to protein family HMM TIGR00965; Belongs to the transferase hexapeptide repeat family.	0.977
AFE_1821	dapE	AFE_1821	AFE_1819	Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155; match to protein family HMM TIGR03538.	Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.	0.980
AFE_1821	rlpA	AFE_1821	AFE_1818	Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155; match to protein family HMM TIGR03538.	Rare lipoprotein A, putative; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.	0.785
AFE_1824	AFE_1817	AFE_1824	AFE_1817	Membrane protein, putative.	Sulfotransferase domain protein; Identified by match to protein family HMM PF00685.	0.576
AFE_1824	AFE_1821	AFE_1824	AFE_1821	Membrane protein, putative.	Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155; match to protein family HMM TIGR03538.	0.651
AFE_1824	dapD	AFE_1824	AFE_1820	Membrane protein, putative.	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Identified by similarity to SP:P03948; match to protein family HMM TIGR00965; Belongs to the transferase hexapeptide repeat family.	0.623
AFE_1824	dapE	AFE_1824	AFE_1819	Membrane protein, putative.	Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.	0.676
AFE_1824	rlpA	AFE_1824	AFE_1818	Membrane protein, putative.	Rare lipoprotein A, putative; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.	0.559
argD	AFE_1821	AFE_0406	AFE_1821	Acetylornithine aminotransferase; Identified by similarity to SP:P54752; match to protein family HMM PF00202; match to protein family HMM TIGR00707; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.	Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155; match to protein family HMM TIGR03538.	0.910
argD	dapA	AFE_0406	AFE_2358	Acetylornithine aminotransferase; Identified by similarity to SP:P54752; match to protein family HMM PF00202; match to protein family HMM TIGR00707; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.	Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	0.535
argD	dapD	AFE_0406	AFE_1820	Acetylornithine aminotransferase; Identified by similarity to SP:P54752; match to protein family HMM PF00202; match to protein family HMM TIGR00707; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Identified by similarity to SP:P03948; match to protein family HMM TIGR00965; Belongs to the transferase hexapeptide repeat family.	0.924
argD	dapE	AFE_0406	AFE_1819	Acetylornithine aminotransferase; Identified by similarity to SP:P54752; match to protein family HMM PF00202; match to protein family HMM TIGR00707; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.	Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.	0.940