pilF protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_0018	AFE_0735	AFE_0018	AFE_0735	LysM domain protein; Identified by match to protein family HMM PF01476.	Fimbrial assembly protein PilQ, putative; Identified by similarity to SP:P34750; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515.	0.960
AFE_0018	AFE_0737	AFE_0018	AFE_0737	LysM domain protein; Identified by match to protein family HMM PF01476.	Fimbrial assembly protein PilO, putative; Identified by match to protein family HMM PF04350.	0.897
AFE_0018	AFE_0739	AFE_0018	AFE_0739	LysM domain protein; Identified by match to protein family HMM PF01476.	Type IV pilus assembly protein PilM; Identified by similarity to PIR:S77726; match to protein family HMM TIGR01175.	0.891
AFE_0018	pilF	AFE_0018	AFE_1931	LysM domain protein; Identified by match to protein family HMM PF01476.	Type IV pilus biogenesis/stability protein PilW; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM TIGR02521.	0.621
AFE_0735	AFE_0018	AFE_0735	AFE_0018	Fimbrial assembly protein PilQ, putative; Identified by similarity to SP:P34750; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515.	LysM domain protein; Identified by match to protein family HMM PF01476.	0.960
AFE_0735	AFE_0737	AFE_0735	AFE_0737	Fimbrial assembly protein PilQ, putative; Identified by similarity to SP:P34750; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515.	Fimbrial assembly protein PilO, putative; Identified by match to protein family HMM PF04350.	0.978
AFE_0735	AFE_0739	AFE_0735	AFE_0739	Fimbrial assembly protein PilQ, putative; Identified by similarity to SP:P34750; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515.	Type IV pilus assembly protein PilM; Identified by similarity to PIR:S77726; match to protein family HMM TIGR01175.	0.982
AFE_0735	pilF	AFE_0735	AFE_1931	Fimbrial assembly protein PilQ, putative; Identified by similarity to SP:P34750; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515.	Type IV pilus biogenesis/stability protein PilW; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM TIGR02521.	0.655
AFE_0737	AFE_0018	AFE_0737	AFE_0018	Fimbrial assembly protein PilO, putative; Identified by match to protein family HMM PF04350.	LysM domain protein; Identified by match to protein family HMM PF01476.	0.897
AFE_0737	AFE_0735	AFE_0737	AFE_0735	Fimbrial assembly protein PilO, putative; Identified by match to protein family HMM PF04350.	Fimbrial assembly protein PilQ, putative; Identified by similarity to SP:P34750; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515.	0.978
AFE_0737	AFE_0739	AFE_0737	AFE_0739	Fimbrial assembly protein PilO, putative; Identified by match to protein family HMM PF04350.	Type IV pilus assembly protein PilM; Identified by similarity to PIR:S77726; match to protein family HMM TIGR01175.	0.988
AFE_0737	pilF	AFE_0737	AFE_1931	Fimbrial assembly protein PilO, putative; Identified by match to protein family HMM PF04350.	Type IV pilus biogenesis/stability protein PilW; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM TIGR02521.	0.685
AFE_0739	AFE_0018	AFE_0739	AFE_0018	Type IV pilus assembly protein PilM; Identified by similarity to PIR:S77726; match to protein family HMM TIGR01175.	LysM domain protein; Identified by match to protein family HMM PF01476.	0.891
AFE_0739	AFE_0735	AFE_0739	AFE_0735	Type IV pilus assembly protein PilM; Identified by similarity to PIR:S77726; match to protein family HMM TIGR01175.	Fimbrial assembly protein PilQ, putative; Identified by similarity to SP:P34750; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515.	0.982
AFE_0739	AFE_0737	AFE_0739	AFE_0737	Type IV pilus assembly protein PilM; Identified by similarity to PIR:S77726; match to protein family HMM TIGR01175.	Fimbrial assembly protein PilO, putative; Identified by match to protein family HMM PF04350.	0.988
AFE_0739	pilF	AFE_0739	AFE_1931	Type IV pilus assembly protein PilM; Identified by similarity to PIR:S77726; match to protein family HMM TIGR01175.	Type IV pilus biogenesis/stability protein PilW; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM TIGR02521.	0.632
AFE_1932	AFE_1935	AFE_1932	AFE_1935	Conserved hypothetical protein; Identified by similarity to GB:AAO54954.1.	Conserved hypothetical protein; Identified by similarity to GB:AAQ61198.1.	0.734
AFE_1932	bamB	AFE_1932	AFE_1936	Conserved hypothetical protein; Identified by similarity to GB:AAO54954.1.	PQQ enzyme repeat domain protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.753
AFE_1932	engA	AFE_1932	AFE_1937	Conserved hypothetical protein; Identified by similarity to GB:AAO54954.1.	Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	0.680
AFE_1932	hisS	AFE_1932	AFE_1934	Conserved hypothetical protein; Identified by similarity to GB:AAO54954.1.	histidyl-tRNA synthetase; Identified by similarity to SP:P04804; match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442.	0.765