STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_1978Identified by match to protein family HMM TIGR01352. (275 aa)    
Predicted Functional Partners:
AFE_2072
Conserved domain protein.
  
     0.723
AFE_0475
Conserved hypothetical protein; Identified by similarity to GB:AAQ60147.1.
  
     0.705
AFE_2745
Conserved hypothetical protein; Identified by similarity to PIR:S61401.
  
     0.687
AFE_1915
Type IV pilus assembly protein PilZ, putative; Identified by similarity to PIR:B59241; match to protein family HMM PF07238.
  
     0.623
AFE_0482
Conserved hypothetical protein; Identified by similarity to PIR:B83271.
  
     0.616
ftsL
Cell division protein FtsL; Essential cell division protein; Belongs to the FtsL family.
  
     0.598
AFE_0485
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
 
   0.597
AFE_0666
YCII-related domain protein; Identified by match to protein family HMM PF03795.
 
    0.538
AFE_0593
Chorismate lyase family protein; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family.
  
     0.513
AFE_2292
TonB-dependent receptor; Identified by match to protein family HMM PF00593.
  
   0.506
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.