STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_1997Autoinducer-binding transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196; match to protein family HMM PF03472. (237 aa)    
Predicted Functional Partners:
AFE_1999
Autoinducer synthesis protein; Identified by similarity to SP:P12747; match to protein family HMM PF00765.
 
  
 0.945
AFE_1710
Hypothetical protein; Identified by glimmer; putative.
  
 
 0.630
AFE_3057
Sensory box-containing diguanylate cyclase, putative; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM PF08447; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
  
 
 0.608
AFE_1998
Hypothetical protein; Identified by glimmer; putative.
     
 0.582
AFE_1707
Sensory box-containing diguanylate cyclase, putative; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
  
 
 0.573
AFE_1725
Sensory box-containing diguanylate cyclase, putative; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
  
 
 0.573
AFE_1595
Hypothetical protein; Identified by glimmer; putative.
  
  
 0.540
kdpD
Sensor histidine kinase KdpD; Identified by similarity to SP:P21865; match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702.
 
 
 0.524
AFE_1996
Hypothetical protein; Identified by glimmer; putative.
       0.507
AFE_2148
DNA-binding protein, putative; Identified by similarity to GB:AAO56394.1; match to protein family HMM PF01381; match to protein family HMM PF07883.
   
 
 0.483
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.