AFE_1997 protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AFE_1997

Autoinducer-binding transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196; match to protein family HMM PF03472. (237 aa)

Predicted Functional Partners:

AFE_1999

0.912

AFE_1998

0.732

AFE_1710

0.581

AFE_3057

0.563

AFE_1707

0.529

AFE_1725

0.529

AFE_1595

0.523

AFE_1996

0.507

kdpD

0.499

AFE_2148

0.454

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_1595	AFE_1707	AFE_1595	AFE_1707	Hypothetical protein; Identified by glimmer; putative.	Sensory box-containing diguanylate cyclase, putative; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.	0.918
AFE_1595	AFE_1710	AFE_1595	AFE_1710	Hypothetical protein; Identified by glimmer; putative.	Hypothetical protein; Identified by glimmer; putative.	0.964
AFE_1595	AFE_1725	AFE_1595	AFE_1725	Hypothetical protein; Identified by glimmer; putative.	Sensory box-containing diguanylate cyclase, putative; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.	0.916
AFE_1595	AFE_1997	AFE_1595	AFE_1997	Hypothetical protein; Identified by glimmer; putative.	Autoinducer-binding transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196; match to protein family HMM PF03472.	0.523
AFE_1595	AFE_2148	AFE_1595	AFE_2148	Hypothetical protein; Identified by glimmer; putative.	DNA-binding protein, putative; Identified by similarity to GB:AAO56394.1; match to protein family HMM PF01381; match to protein family HMM PF07883.	0.451
AFE_1595	AFE_3057	AFE_1595	AFE_3057	Hypothetical protein; Identified by glimmer; putative.	Sensory box-containing diguanylate cyclase, putative; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM PF08447; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.	0.784
AFE_1595	kdpD	AFE_1595	AFE_2229	Hypothetical protein; Identified by glimmer; putative.	Sensor histidine kinase KdpD; Identified by similarity to SP:P21865; match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702.	0.477
AFE_1707	AFE_1595	AFE_1707	AFE_1595	Sensory box-containing diguanylate cyclase, putative; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.	Hypothetical protein; Identified by glimmer; putative.	0.918
AFE_1707	AFE_1710	AFE_1707	AFE_1710	Sensory box-containing diguanylate cyclase, putative; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.	Hypothetical protein; Identified by glimmer; putative.	0.874
AFE_1707	AFE_1725	AFE_1707	AFE_1725	Sensory box-containing diguanylate cyclase, putative; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.	Sensory box-containing diguanylate cyclase, putative; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.	0.736
AFE_1707	AFE_1997	AFE_1707	AFE_1997	Sensory box-containing diguanylate cyclase, putative; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.	Autoinducer-binding transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196; match to protein family HMM PF03472.	0.529
AFE_1707	AFE_3057	AFE_1707	AFE_3057	Sensory box-containing diguanylate cyclase, putative; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.	Sensory box-containing diguanylate cyclase, putative; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM PF08447; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.	0.686
AFE_1707	kdpD	AFE_1707	AFE_2229	Sensory box-containing diguanylate cyclase, putative; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.	Sensor histidine kinase KdpD; Identified by similarity to SP:P21865; match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702.	0.480
AFE_1710	AFE_1595	AFE_1710	AFE_1595	Hypothetical protein; Identified by glimmer; putative.	Hypothetical protein; Identified by glimmer; putative.	0.964
AFE_1710	AFE_1707	AFE_1710	AFE_1707	Hypothetical protein; Identified by glimmer; putative.	Sensory box-containing diguanylate cyclase, putative; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.	0.874
AFE_1710	AFE_1725	AFE_1710	AFE_1725	Hypothetical protein; Identified by glimmer; putative.	Sensory box-containing diguanylate cyclase, putative; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.	0.874
AFE_1710	AFE_1997	AFE_1710	AFE_1997	Hypothetical protein; Identified by glimmer; putative.	Autoinducer-binding transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196; match to protein family HMM PF03472.	0.581
AFE_1710	AFE_2148	AFE_1710	AFE_2148	Hypothetical protein; Identified by glimmer; putative.	DNA-binding protein, putative; Identified by similarity to GB:AAO56394.1; match to protein family HMM PF01381; match to protein family HMM PF07883.	0.462
AFE_1710	AFE_3057	AFE_1710	AFE_3057	Hypothetical protein; Identified by glimmer; putative.	Sensory box-containing diguanylate cyclase, putative; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM PF08447; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.	0.650
AFE_1710	kdpD	AFE_1710	AFE_2229	Hypothetical protein; Identified by glimmer; putative.	Sensor histidine kinase KdpD; Identified by similarity to SP:P21865; match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702.	0.445

page 1 of 3

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2026

Credits

Access

Info

About