STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_2009Conserved domain protein; Identified by similarity to GB:AAN32872.1. (176 aa)    
Predicted Functional Partners:
AFE_2998
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.666
AFE_3229
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.619
AFE_0763
TonB-dependent receptor, putative; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.607
AFE_2935
TonB-dependent receptor; Identified by match to protein family HMM PF00593.
  
     0.587
AFE_2011
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
 
     0.560
cyc2
Cytochrome c; Identified by similarity to GB:CAA07031.1.
  
     0.547
AFE_2007
Conserved hypothetical protein; Identified by similarity to GB:CAD71376.1.
       0.545
AFE_2008
Conserved hypothetical protein; Identified by similarity to GB:AAQ59281.1.
       0.545
AFE_2005
Isonitrile hydratase, putative; Identified by similarity to GB:BAC41251.1; match to protein family HMM PF01965.
       0.531
AFE_2006
Transcriptional regulator, putative; Identified by match to protein family HMM PF04299.
       0.531
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.