Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFE_2114Conserved hypothetical protein; Identified by match to protein family HMM PF05494. (219 aa)    
Predicted Functional Partners:
AFE_0160
Identified by match to protein family HMM PF02470.
 
 0.980
AFE_2113
vacJ lipoprotein; Identified by similarity to SP:P76506; match to protein family HMM PF04333.
 
 
 
 0.959
AFE_1830
Toluene tolerance protein, putative; Identified by similarity to GB:AAD17960.1; match to protein family HMM PF05494.
  
  
 
0.927
AFE_0161
Toluene tolerance protein, putative; Identified by match to protein family HMM PF05494.
  
  
 
0.926
AFE_2135
Identified by match to protein family HMM PF02470.
  
 0.916
AFE_0162
Conserved hypothetical protein; Identified by similarity to GB:CAD16664.1.
  
 
 0.890
AFE_0159
Toluene tolerance protein Ttg2B, putative; Identified by similarity to GB:AAD17958.1; match to protein family HMM PF02405; match to protein family HMM TIGR00056.
 
 
 0.858
AFE_2118
Membrane protein, putative; Identified by similarity to GB:CAD85670.1; match to protein family HMM TIGR03480.
 
     0.846
AFE_2115
Radical SAM domain protein; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR03470.
 
     0.838
AFE_0158
Toluene ABC transporter, ATP-binding protein, putative; Identified by similarity to GB:AAD17957.1; match to protein family HMM PF00005.
  
 
 0.830
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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