Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cbbQ-2CbbQ protein; Identified by similarity to GB:BAA76361.1; match to protein family HMM PF07728; match to protein family HMM PF08406. (272 aa)    
Predicted Functional Partners:
AFE_2157
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
 
 
 0.963
AFE_1677
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
 
 
 0.911
AFE_2535
Von Willebrand factor type A domain protein.
 
 
 0.878
AFE_3054
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
 
 
 0.877
cbbS-1
Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.
  
  
 0.633
cbbL2
Ribulose bisphosphate carboxylase, large subunit 2; Identified by match to protein family HMM PF00016; match to protein family HMM PF02493; match to protein family HMM PF02788; Belongs to the RuBisCO large chain family.
     
 0.503
cbbP
Phosphoribulokinase; Identified by similarity to SP:P12033; match to protein family HMM PF00485.
      
 0.472
cbbR
Rubisco operon transcriptional regulator; Identified by similarity to SP:Q06610; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
   
  
 0.446
gap
Glyceraldehyde-3-phosphate dehydrogenase, type I; Identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
     
 0.441
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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