STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_2157Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092. (759 aa)    
Predicted Functional Partners:
cbbQ-2
CbbQ protein; Identified by similarity to GB:BAA76361.1; match to protein family HMM PF07728; match to protein family HMM PF08406.
 
  
 0.969
cbbL2
Ribulose bisphosphate carboxylase, large subunit 2; Identified by match to protein family HMM PF00016; match to protein family HMM PF02493; match to protein family HMM PF02788; Belongs to the RuBisCO large chain family.
 
   
 0.950
cbbQ-1
CbbQ protein; Identified by similarity to GB:BAA76361.1; match to protein family HMM PF07728; match to protein family HMM PF08406.
 
  
 0.947
p30
P30 protein; Identified by similarity to GB:BAA76361.1; match to protein family HMM PF07728; match to protein family HMM PF08406.
 
  
 0.827
AFE_2536
CbbQ/NirQ/NorQ/GpvN family protein; Identified by similarity to SP:Q02441; similarity to SP:Q51858; match to protein family HMM PF07728; match to protein family HMM PF08406.
 
  
 0.813
cbbS-1
Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.
 
   
 0.528
AFE_1297
Cobalamin biosynthesis protein, CobS family; Identified by match to protein family HMM PF07728.
 
  
 0.433
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.