sreD protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

sreD

Sulfur reductase; Identified by similarity to GB:BAC59713.1. (188 aa)

Predicted Functional Partners:

sreA

0.949

sreB

0.834

sreC

0.799

AFE_2176

0.430

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_2176	sreA	AFE_2176	AFE_2177	Peptidyl-arginine deiminase, Porphyromonas-type; Identified by match to protein family HMM PF04371; Belongs to the agmatine deiminase family.	Sulfur reductase, molybdopterin subunit; Identified by similarity to GB:CAC86937.1; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.485
AFE_2176	sreB	AFE_2176	AFE_2178	Peptidyl-arginine deiminase, Porphyromonas-type; Identified by match to protein family HMM PF04371; Belongs to the agmatine deiminase family.	Sulfur reductase, iron-sulfur binding subunit; Identified by similarity to GB:CAC86938.1; match to protein family HMM PF00037.	0.430
AFE_2176	sreC	AFE_2176	AFE_2179	Peptidyl-arginine deiminase, Porphyromonas-type; Identified by match to protein family HMM PF04371; Belongs to the agmatine deiminase family.	Sulfur reductase, membrane subunit, putative; Identified by match to protein family HMM PF03916.	0.430
AFE_2176	sreD	AFE_2176	AFE_2181	Peptidyl-arginine deiminase, Porphyromonas-type; Identified by match to protein family HMM PF04371; Belongs to the agmatine deiminase family.	Sulfur reductase; Identified by similarity to GB:BAC59713.1.	0.430
sreA	AFE_2176	AFE_2177	AFE_2176	Sulfur reductase, molybdopterin subunit; Identified by similarity to GB:CAC86937.1; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Peptidyl-arginine deiminase, Porphyromonas-type; Identified by match to protein family HMM PF04371; Belongs to the agmatine deiminase family.	0.485
sreA	sreB	AFE_2177	AFE_2178	Sulfur reductase, molybdopterin subunit; Identified by similarity to GB:CAC86937.1; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Sulfur reductase, iron-sulfur binding subunit; Identified by similarity to GB:CAC86938.1; match to protein family HMM PF00037.	0.998
sreA	sreC	AFE_2177	AFE_2179	Sulfur reductase, molybdopterin subunit; Identified by similarity to GB:CAC86937.1; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Sulfur reductase, membrane subunit, putative; Identified by match to protein family HMM PF03916.	0.986
sreA	sreD	AFE_2177	AFE_2181	Sulfur reductase, molybdopterin subunit; Identified by similarity to GB:CAC86937.1; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Sulfur reductase; Identified by similarity to GB:BAC59713.1.	0.949
sreB	AFE_2176	AFE_2178	AFE_2176	Sulfur reductase, iron-sulfur binding subunit; Identified by similarity to GB:CAC86938.1; match to protein family HMM PF00037.	Peptidyl-arginine deiminase, Porphyromonas-type; Identified by match to protein family HMM PF04371; Belongs to the agmatine deiminase family.	0.430
sreB	sreA	AFE_2178	AFE_2177	Sulfur reductase, iron-sulfur binding subunit; Identified by similarity to GB:CAC86938.1; match to protein family HMM PF00037.	Sulfur reductase, molybdopterin subunit; Identified by similarity to GB:CAC86937.1; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.998
sreB	sreC	AFE_2178	AFE_2179	Sulfur reductase, iron-sulfur binding subunit; Identified by similarity to GB:CAC86938.1; match to protein family HMM PF00037.	Sulfur reductase, membrane subunit, putative; Identified by match to protein family HMM PF03916.	0.980
sreB	sreD	AFE_2178	AFE_2181	Sulfur reductase, iron-sulfur binding subunit; Identified by similarity to GB:CAC86938.1; match to protein family HMM PF00037.	Sulfur reductase; Identified by similarity to GB:BAC59713.1.	0.834
sreC	AFE_2176	AFE_2179	AFE_2176	Sulfur reductase, membrane subunit, putative; Identified by match to protein family HMM PF03916.	Peptidyl-arginine deiminase, Porphyromonas-type; Identified by match to protein family HMM PF04371; Belongs to the agmatine deiminase family.	0.430
sreC	sreA	AFE_2179	AFE_2177	Sulfur reductase, membrane subunit, putative; Identified by match to protein family HMM PF03916.	Sulfur reductase, molybdopterin subunit; Identified by similarity to GB:CAC86937.1; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.986
sreC	sreB	AFE_2179	AFE_2178	Sulfur reductase, membrane subunit, putative; Identified by match to protein family HMM PF03916.	Sulfur reductase, iron-sulfur binding subunit; Identified by similarity to GB:CAC86938.1; match to protein family HMM PF00037.	0.980
sreC	sreD	AFE_2179	AFE_2181	Sulfur reductase, membrane subunit, putative; Identified by match to protein family HMM PF03916.	Sulfur reductase; Identified by similarity to GB:BAC59713.1.	0.799
sreD	AFE_2176	AFE_2181	AFE_2176	Sulfur reductase; Identified by similarity to GB:BAC59713.1.	Peptidyl-arginine deiminase, Porphyromonas-type; Identified by match to protein family HMM PF04371; Belongs to the agmatine deiminase family.	0.430
sreD	sreA	AFE_2181	AFE_2177	Sulfur reductase; Identified by similarity to GB:BAC59713.1.	Sulfur reductase, molybdopterin subunit; Identified by similarity to GB:CAC86937.1; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.949
sreD	sreB	AFE_2181	AFE_2178	Sulfur reductase; Identified by similarity to GB:BAC59713.1.	Sulfur reductase, iron-sulfur binding subunit; Identified by similarity to GB:CAC86938.1; match to protein family HMM PF00037.	0.834
sreD	sreC	AFE_2181	AFE_2179	Sulfur reductase; Identified by similarity to GB:BAC59713.1.	Sulfur reductase, membrane subunit, putative; Identified by match to protein family HMM PF03916.	0.799