STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pepACytosol aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides. (500 aa)    
Predicted Functional Partners:
gshB
Glutathione synthetase; Identified by similarity to SP:P04425; match to protein family HMM PF02951; match to protein family HMM PF02955; match to protein family HMM PF08443; match to protein family HMM TIGR01380; Belongs to the prokaryotic GSH synthase family.
   
 
 0.940
pepN
Identified by similarity to SP:P04825; match to protein family HMM PF01433; match to protein family HMM TIGR02414.
   
 0.938
gshA
Glutamate--cysteine ligase; Identified by match to protein family HMM PF08886; match to protein family HMM TIGR02049.
    
 0.904
holC
DNA polymerase III, chi subunit; Identified by similarity to SP:P28905; match to protein family HMM PF04364.
  
  
 0.831
aspC
Aspartate aminotransferase; Identified by similarity to SP:P23034; match to protein family HMM PF00155.
   
  0.819
AFE_0239
Aminotransferase, class II; Identified by similarity to SP:P23256; similarity to SP:Q08432; match to protein family HMM PF00155.
  
 
  0.804
AFE_1772
Deoxyguanosine kinase/deoxyadenosine kinase, putative; Identified by similarity to SP:Q59483; similarity to SP:Q59484.
   
 0.798
AFE_2199
Identified by match to protein family HMM PF03739.
       0.597
AFE_2200
Identified by match to protein family HMM PF03739.
       0.597
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
 
     0.557
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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