AFE_2258 protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_2255	AFE_2256	AFE_2255	AFE_2256	Hypothetical protein; Identified by glimmer; putative.	Identified by match to protein family HMM PF00753.	0.715
AFE_2255	AFE_2257	AFE_2255	AFE_2257	Hypothetical protein; Identified by glimmer; putative.	Conserved hypothetical protein.	0.443
AFE_2255	AFE_2258	AFE_2255	AFE_2258	Hypothetical protein; Identified by glimmer; putative.	Membrane protein, putative; Identified by match to protein family HMM PF01925.	0.466
AFE_2255	AFE_2259	AFE_2255	AFE_2259	Hypothetical protein; Identified by glimmer; putative.	Identified by match to protein family HMM PF00582.	0.400
AFE_2256	AFE_2255	AFE_2256	AFE_2255	Identified by match to protein family HMM PF00753.	Hypothetical protein; Identified by glimmer; putative.	0.715
AFE_2256	AFE_2257	AFE_2256	AFE_2257	Identified by match to protein family HMM PF00753.	Conserved hypothetical protein.	0.482
AFE_2256	AFE_2258	AFE_2256	AFE_2258	Identified by match to protein family HMM PF00753.	Membrane protein, putative; Identified by match to protein family HMM PF01925.	0.482
AFE_2256	AFE_2259	AFE_2256	AFE_2259	Identified by match to protein family HMM PF00753.	Identified by match to protein family HMM PF00582.	0.434
AFE_2257	AFE_2255	AFE_2257	AFE_2255	Conserved hypothetical protein.	Hypothetical protein; Identified by glimmer; putative.	0.443
AFE_2257	AFE_2256	AFE_2257	AFE_2256	Conserved hypothetical protein.	Identified by match to protein family HMM PF00753.	0.482
AFE_2257	AFE_2258	AFE_2257	AFE_2258	Conserved hypothetical protein.	Membrane protein, putative; Identified by match to protein family HMM PF01925.	0.952
AFE_2257	AFE_2259	AFE_2257	AFE_2259	Conserved hypothetical protein.	Identified by match to protein family HMM PF00582.	0.686
AFE_2257	purD	AFE_2257	AFE_2261	Conserved hypothetical protein.	Phosphoribosylamine--glycine ligase; Identified by similarity to SP:P15640; match to protein family HMM PF01071; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877; Belongs to the GARS family.	0.403
AFE_2257	purH	AFE_2257	AFE_2260	Conserved hypothetical protein.	Phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Identified by similarity to SP:P15639; match to protein family HMM PF01808; match to protein family HMM PF02142; match to protein family HMM TIGR00355.	0.417
AFE_2257	pyrD	AFE_2257	AFE_2264	Conserved hypothetical protein.	Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	0.457
AFE_2258	AFE_2255	AFE_2258	AFE_2255	Membrane protein, putative; Identified by match to protein family HMM PF01925.	Hypothetical protein; Identified by glimmer; putative.	0.466
AFE_2258	AFE_2256	AFE_2258	AFE_2256	Membrane protein, putative; Identified by match to protein family HMM PF01925.	Identified by match to protein family HMM PF00753.	0.482
AFE_2258	AFE_2257	AFE_2258	AFE_2257	Membrane protein, putative; Identified by match to protein family HMM PF01925.	Conserved hypothetical protein.	0.952
AFE_2258	AFE_2259	AFE_2258	AFE_2259	Membrane protein, putative; Identified by match to protein family HMM PF01925.	Identified by match to protein family HMM PF00582.	0.686
AFE_2258	purD	AFE_2258	AFE_2261	Membrane protein, putative; Identified by match to protein family HMM PF01925.	Phosphoribosylamine--glycine ligase; Identified by similarity to SP:P15640; match to protein family HMM PF01071; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877; Belongs to the GARS family.	0.419