Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AFE_2269Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472. (133 aa)    
Predicted Functional Partners:
AFE_2270
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
 
   0.973
AFE_0768
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
 
   0.880
AFE_2273
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
 
   0.880
AFE_1485
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
  
   0.866
AFE_3003
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
  
   0.864
AFE_2268
Identified by match to protein family HMM TIGR01352.
 
   0.862
AFE_2299
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
  
   0.861
AFE_0485
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
 
   0.733
tolQ
TolQ protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
   0.677
AFE_2271
Transcriptional regulator, putative; Identified by match to protein family HMM PF00486.
       0.586
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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