AFE_2275 protein (Acidithiobacillus ferrooxidans)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AFE_2275

Identified by match to protein family HMM TIGR01352. (242 aa)

Predicted Functional Partners:

AFE_2273

0.843

AFE_2274

0.728

AFE_0763

0.714

AFE_2040

0.699

AFE_3229

0.696

AFE_2292

0.689

AFE_2998

0.675

tolQ

0.657

AFE_2276

0.649

AFE_2935

0.645

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_0763	AFE_2274	AFE_0763	AFE_2274	TonB-dependent receptor, putative; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.	Conserved hypothetical protein; Identified by similarity to PIR:AG1979; match to protein family HMM PF01436; match to protein family HMM PF08450.	0.595
AFE_0763	AFE_2275	AFE_0763	AFE_2275	TonB-dependent receptor, putative; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.	Identified by match to protein family HMM TIGR01352.	0.714
AFE_2040	AFE_2274	AFE_2040	AFE_2274	TonB-dependent receptor; Identified by match to protein family HMM PF00593.	Conserved hypothetical protein; Identified by similarity to PIR:AG1979; match to protein family HMM PF01436; match to protein family HMM PF08450.	0.780
AFE_2040	AFE_2275	AFE_2040	AFE_2275	TonB-dependent receptor; Identified by match to protein family HMM PF00593.	Identified by match to protein family HMM TIGR01352.	0.699
AFE_2040	AFE_2998	AFE_2040	AFE_2998	TonB-dependent receptor; Identified by match to protein family HMM PF00593.	TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.	0.741
AFE_2273	AFE_2274	AFE_2273	AFE_2274	MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.	Conserved hypothetical protein; Identified by similarity to PIR:AG1979; match to protein family HMM PF01436; match to protein family HMM PF08450.	0.747
AFE_2273	AFE_2275	AFE_2273	AFE_2275	MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.	Identified by match to protein family HMM TIGR01352.	0.843
AFE_2273	AFE_2276	AFE_2273	AFE_2276	MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.	Conserved hypothetical protein; Identified by similarity to PIR:D83296; match to protein family HMM TIGR03276.	0.417
AFE_2273	AFE_2935	AFE_2273	AFE_2935	MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.	TonB-dependent receptor; Identified by match to protein family HMM PF00593.	0.424
AFE_2273	AFE_3229	AFE_2273	AFE_3229	MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.	TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.	0.401
AFE_2274	AFE_0763	AFE_2274	AFE_0763	Conserved hypothetical protein; Identified by similarity to PIR:AG1979; match to protein family HMM PF01436; match to protein family HMM PF08450.	TonB-dependent receptor, putative; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.	0.595
AFE_2274	AFE_2040	AFE_2274	AFE_2040	Conserved hypothetical protein; Identified by similarity to PIR:AG1979; match to protein family HMM PF01436; match to protein family HMM PF08450.	TonB-dependent receptor; Identified by match to protein family HMM PF00593.	0.780
AFE_2274	AFE_2273	AFE_2274	AFE_2273	Conserved hypothetical protein; Identified by similarity to PIR:AG1979; match to protein family HMM PF01436; match to protein family HMM PF08450.	MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.	0.747
AFE_2274	AFE_2275	AFE_2274	AFE_2275	Conserved hypothetical protein; Identified by similarity to PIR:AG1979; match to protein family HMM PF01436; match to protein family HMM PF08450.	Identified by match to protein family HMM TIGR01352.	0.728
AFE_2274	AFE_2276	AFE_2274	AFE_2276	Conserved hypothetical protein; Identified by similarity to PIR:AG1979; match to protein family HMM PF01436; match to protein family HMM PF08450.	Conserved hypothetical protein; Identified by similarity to PIR:D83296; match to protein family HMM TIGR03276.	0.477
AFE_2274	AFE_2292	AFE_2274	AFE_2292	Conserved hypothetical protein; Identified by similarity to PIR:AG1979; match to protein family HMM PF01436; match to protein family HMM PF08450.	TonB-dependent receptor; Identified by match to protein family HMM PF00593.	0.774
AFE_2274	AFE_2935	AFE_2274	AFE_2935	Conserved hypothetical protein; Identified by similarity to PIR:AG1979; match to protein family HMM PF01436; match to protein family HMM PF08450.	TonB-dependent receptor; Identified by match to protein family HMM PF00593.	0.770
AFE_2274	AFE_2998	AFE_2274	AFE_2998	Conserved hypothetical protein; Identified by similarity to PIR:AG1979; match to protein family HMM PF01436; match to protein family HMM PF08450.	TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.	0.587
AFE_2274	AFE_3229	AFE_2274	AFE_3229	Conserved hypothetical protein; Identified by similarity to PIR:AG1979; match to protein family HMM PF01436; match to protein family HMM PF08450.	TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.	0.649
AFE_2275	AFE_0763	AFE_2275	AFE_0763	Identified by match to protein family HMM TIGR01352.	TonB-dependent receptor, putative; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.	0.714