STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_2277Major facilitator family transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690. (465 aa)    
Predicted Functional Partners:
AFE_2276
Conserved hypothetical protein; Identified by similarity to PIR:D83296; match to protein family HMM TIGR03276.
       0.647
AFE_2457
Amino acid permease family protein; Identified by match to protein family HMM PF00324.
  
     0.597
AFE_1782
Amino acid permease family protein; Identified by match to protein family HMM PF00324.
  
     0.589
AFE_0439
Amino acid permease family protein; Identified by match to protein family HMM PF00324.
  
     0.579
AFE_2275
Identified by match to protein family HMM TIGR01352.
       0.543
phnG
Phosphonate metabolism protein PhnG; Identified by similarity to SP:P16685; match to protein family HMM TIGR03293.
       0.526
phnH
Phosphonate metabolism protein phnH; Identified by similarity to SP:P16686.
       0.526
phnI
Phosphonate metabolism protein PhnI; Identified by similarity to SP:P16687; match to protein family HMM PF05861.
       0.526
phnJ
Phosphonate metabolism protein PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
       0.526
phnK
Phosphonate ABC transporter, ATP-binding protein PhnK; Identified by similarity to SP:P16678; match to protein family HMM PF00005; match to protein family HMM TIGR02323.
       0.526
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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