STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_2287Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM TIGR02325. (250 aa)    
Predicted Functional Partners:
phnG
Phosphonate metabolism protein PhnG; Identified by similarity to SP:P16685; match to protein family HMM TIGR03293.
 
  
 0.991
phnJ
Phosphonate metabolism protein PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
 
  
 0.990
phnH
Phosphonate metabolism protein phnH; Identified by similarity to SP:P16686.
 
  
 0.983
phnI
Phosphonate metabolism protein PhnI; Identified by similarity to SP:P16687; match to protein family HMM PF05861.
 
  
 0.983
phnL
Phosphonate ABC transporter, ATP-binding protein PhnL; Identified by similarity to SP:P16679; match to protein family HMM PF00005; match to protein family HMM TIGR02324.
 
  
 0.979
AFE_2284
phnM protein, putative; Identified by similarity to SP:P16689; match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR02318.
 
  
 0.976
phnK
Phosphonate ABC transporter, ATP-binding protein PhnK; Identified by similarity to SP:P16678; match to protein family HMM PF00005; match to protein family HMM TIGR02323.
 
  
 0.973
AFE_2286
PhnN protein, putative; Identified by similarity to SP:P16690.
 
  
 0.965
AFE_2285
Conserved hypothetical protein; Identified by similarity to GB:BAB51509.1; match to protein family HMM PF06299; match to protein family HMM TIGR03223.
 
     0.949
AFE_2148
DNA-binding protein, putative; Identified by similarity to GB:AAO56394.1; match to protein family HMM PF01381; match to protein family HMM PF07883.
 
  
 0.870
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.