AFE_2330 protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AFE_2330

Membrane protein, putative; Identified by match to protein family HMM PF03988. (264 aa)

Predicted Functional Partners:

AFE_0920

0.552

AFE_0105

0.547

AFE_2329

0.526

AFE_2333

0.508

AFE_2331

0.501

AFE_0439

0.463

AFE_2457

0.432

AFE_1782

0.417

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
AFE_0105	AFE_0439	Metal ion transporter, NRAMP family; Identified by match to protein family HMM PF01566.	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	0.512
AFE_0105	AFE_1782	Metal ion transporter, NRAMP family; Identified by match to protein family HMM PF01566.	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	0.473
AFE_0105	AFE_2330	Metal ion transporter, NRAMP family; Identified by match to protein family HMM PF01566.	Membrane protein, putative; Identified by match to protein family HMM PF03988.	0.547
AFE_0105	AFE_2457	Metal ion transporter, NRAMP family; Identified by match to protein family HMM PF01566.	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	0.475
AFE_0439	AFE_0105	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	Metal ion transporter, NRAMP family; Identified by match to protein family HMM PF01566.	0.512
AFE_0439	AFE_0920	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	Metal ion transporter, NRAMP family.	0.432
AFE_0439	AFE_2330	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	Membrane protein, putative; Identified by match to protein family HMM PF03988.	0.463
AFE_0920	AFE_0439	Metal ion transporter, NRAMP family.	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	0.432
AFE_0920	AFE_2330	Metal ion transporter, NRAMP family.	Membrane protein, putative; Identified by match to protein family HMM PF03988.	0.552
AFE_1782	AFE_0105	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	Metal ion transporter, NRAMP family; Identified by match to protein family HMM PF01566.	0.473
AFE_1782	AFE_2330	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	Membrane protein, putative; Identified by match to protein family HMM PF03988.	0.417
AFE_2329	AFE_2330	Hypothetical protein; Identified by glimmer; putative.	Membrane protein, putative; Identified by match to protein family HMM PF03988.	0.526
AFE_2330	AFE_0105	Membrane protein, putative; Identified by match to protein family HMM PF03988.	Metal ion transporter, NRAMP family; Identified by match to protein family HMM PF01566.	0.547
AFE_2330	AFE_0439	Membrane protein, putative; Identified by match to protein family HMM PF03988.	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	0.463
AFE_2330	AFE_0920	Membrane protein, putative; Identified by match to protein family HMM PF03988.	Metal ion transporter, NRAMP family.	0.552
AFE_2330	AFE_1782	Membrane protein, putative; Identified by match to protein family HMM PF03988.	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	0.417
AFE_2330	AFE_2329	Membrane protein, putative; Identified by match to protein family HMM PF03988.	Hypothetical protein; Identified by glimmer; putative.	0.526
AFE_2330	AFE_2331	Membrane protein, putative; Identified by match to protein family HMM PF03988.	Hypothetical protein; Identified by glimmer; putative.	0.501
AFE_2330	AFE_2333	Membrane protein, putative; Identified by match to protein family HMM PF03988.	Major facilitator family transporter; Identified by match to protein family HMM PF07690.	0.508
AFE_2330	AFE_2457	Membrane protein, putative; Identified by match to protein family HMM PF03988.	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	0.432