AFE_2339 protein (Acidithiobacillus ferrooxidans)

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Score

AFE_2339

GatB/Yqey domain protein; Identified by match to protein family HMM PF02637. (148 aa)

Predicted Functional Partners:

rpsU

0.981

dnaG

0.777

mutS2

0.774

rpsO

0.640

rpoD

0.570

AFE_2342

0.449

rpmE

0.421

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_2339	AFE_2342	AFE_2339	AFE_2342	GatB/Yqey domain protein; Identified by match to protein family HMM PF02637.	RNA polymerase sigm-70 factor family; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.	0.449
AFE_2339	dnaG	AFE_2339	AFE_2337	GatB/Yqey domain protein; Identified by match to protein family HMM PF02637.	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	0.777
AFE_2339	mutS2	AFE_2339	AFE_2338	GatB/Yqey domain protein; Identified by match to protein family HMM PF02637.	MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.	0.774
AFE_2339	rpmE	AFE_2339	AFE_0659	GatB/Yqey domain protein; Identified by match to protein family HMM PF02637.	Ribosomal protein L31; Binds the 23S rRNA.	0.421
AFE_2339	rpoD	AFE_2339	AFE_2336	GatB/Yqey domain protein; Identified by match to protein family HMM PF02637.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.570
AFE_2339	rpsO	AFE_2339	AFE_0394	GatB/Yqey domain protein; Identified by match to protein family HMM PF02637.	Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.640
AFE_2339	rpsU	AFE_2339	AFE_2340	GatB/Yqey domain protein; Identified by match to protein family HMM PF02637.	Ribosomal protein S21; Identified by similarity to SP:P02379; match to protein family HMM PF01165; match to protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family.	0.981
AFE_2342	AFE_2339	AFE_2342	AFE_2339	RNA polymerase sigm-70 factor family; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.	GatB/Yqey domain protein; Identified by match to protein family HMM PF02637.	0.449
AFE_2342	dnaG	AFE_2342	AFE_2337	RNA polymerase sigm-70 factor family; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	0.746
AFE_2342	mutS2	AFE_2342	AFE_2338	RNA polymerase sigm-70 factor family; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.	MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.	0.439
AFE_2342	rpoD	AFE_2342	AFE_2336	RNA polymerase sigm-70 factor family; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.426
AFE_2342	rpsU	AFE_2342	AFE_2340	RNA polymerase sigm-70 factor family; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.	Ribosomal protein S21; Identified by similarity to SP:P02379; match to protein family HMM PF01165; match to protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family.	0.472
dnaG	AFE_2339	AFE_2337	AFE_2339	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	GatB/Yqey domain protein; Identified by match to protein family HMM PF02637.	0.777
dnaG	AFE_2342	AFE_2337	AFE_2342	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	RNA polymerase sigm-70 factor family; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.	0.746
dnaG	mutS2	AFE_2337	AFE_2338	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.	0.805
dnaG	rpoD	AFE_2337	AFE_2336	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.822
dnaG	rpsU	AFE_2337	AFE_2340	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	Ribosomal protein S21; Identified by similarity to SP:P02379; match to protein family HMM PF01165; match to protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family.	0.811
mutS2	AFE_2339	AFE_2338	AFE_2339	MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.	GatB/Yqey domain protein; Identified by match to protein family HMM PF02637.	0.774
mutS2	AFE_2342	AFE_2338	AFE_2342	MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.	RNA polymerase sigm-70 factor family; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.	0.439
mutS2	dnaG	AFE_2338	AFE_2337	MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	0.805